How does degPatterns() decide what height to use for cutting tree about degreport HOT 1 CLOSED

Hi, when running the function is going to use diana package to cut the tree. By default, several options are available, you can visualize these plots benchmarking and benchmarking_curve from the object that degPattern returns. You can choose a cutoff from there and use the function degPlotCluster to choose that cutoff to split genes with the option cluster_column indicating the value from the benchmarking plots that fits better your sample. You could do your own cutoff and then create a column in the table used by degPlotCluster if you want to plot the clusters in the same way.

from degreport.