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muscat

Multi-sample multi-group scRNA-seq analysis tools

myconfig

some personal files to work in cloud

mycv

latex code for my CV

mygeekcode

basic projects using arduino and rasperry pi

mypubs

creation of methods with the purpose of tools comparison

myrfunctions

some functions that I use to increase productivity and reproducibility

myself

source code from my personal web page

nf-channel-debug

notes.statistics

my notes about good resources I found over internet

papersdb

connect to pubmed to get main information and save in a db to be analyzed after that

pcbc_c4_analysis

Analysis of C4 data

pheatmap

Pretty heatmaps

pickleshare

File system based database that uses python pickles

prelude

Prelude is an enhanced Emacs 24 distribution that should make your experience with Emacs both more pleasant and more powerful.

pybedtools

Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)

pyensembl

Python interface to ensembl reference genome metadata (exons, transcripts, etc...)

quagmir

A python-based isomiR quantification and analysis pipeline that utilizes a number of recent and novel miRNA biological insights to produce useful analytics

r2dropsmart

Sync entire folders to dropbox with rdrop2 package

recipes

Conda recipes for the bioconda channel.

rpackages

R package development - the Leek group way!

rshiny-mot

rshiny showing table with multi-omic tools

ruvseq

Repository linked to devel version of Bioconductor RUVSeq package

schizomic

sites to place last publications, studies about schizophrenia from psychology to psychiatry. It starts as personal site but it is more than welcome any pull request.

scounts

small RNA counts bias correction based on Argyropoulos, et al (2017)

scripts_hsph

some useful scripts for projects

scrna-tools

Table of software for the analysis of single-cell RNA-seq data.

seqbuster

pipeline for the analysis of small RNA data

seqcluster

small RNA analysis from NGS data

seqcluster-helper

Help for the installation and configuration of seqcluster tool

seqclusterviz

visualization of seqcluster output, try at: