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CRAN status

itol.toolkit

Helper Functions for Interactive Tree Of Life (iTOL)

Features

  • Support all 114 themes among all 23 template types in iTOL v6

  • High throughput generate templates in one command

  • Learn published template themes and use theme

  • Save all-in-one reproducible data locally

Installation

# from CRAN

install.packages("itol.toolkit")

# from GitHub

# install.packages("devtools") # if you have not installed "devtools" package

devtools::install_github("TongZhou2017/itol.toolkit")

Quickstart

# load package
library(itol.toolkit)

# read data
tree <- system.file("extdata",
                    "tree_of_itol_templates.tree",
                    package = "itol.toolkit")
data("template_groups")
df_group <- data.frame(id = unique(template_groups$group), 
                       data = unique(template_groups$group))

# create hub
hub <- create_hub(tree = tree)

## create unit
unit <- create_unit(data = df_group, 
                    key = "Quickstart", 
                    type = "DATASET_COLORSTRIP", 
                    tree = tree)

## add unit into hub
hub <- hub + unit

## write template file
write_hub(hub,getwd())

Support

Please open an issue to report bugs, propose new functions, or ask for help.

License

MIT License

itol.toolkit's People

Contributors

tongzhou2017 avatar

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