ansible-playbook cwl.yml

ansible-playbook toil.yml

ansible-playbook reana.yml

ansible-playbook airflow.yml

ansible-playbook cromwell.yml

ansible-playbook -i inventory galaxy.yml -k -K --extra-vars 'my_pass=<your_hashed_root_password>'

cd ~/cwl_test
source bin/actvate 
cwl-runner example.cwl example-job.yaml

cd ~/toil_test
source bin/actvate 
toil-cwl-runner example.cwl example-job.yaml

helm init
# deploy new cluster and check progress
reana-cluster init --traefik
reana-cluster status
# set environment variables for reana-client
eval $(reana-cluster env --include-admin-token) # since you are admin
cd ~/reana_test
source bin/actvate
reana-client create -n my-analysis
export REANA_WORKON=my-analysis
# upload input code and data to the workspace
reana-client upload
# start computational workflow
reana-client start
# check its progress
reana-client status
# list workspace files
reana-client ls
# download output results
reana-client download

cd ~/airflow_test
source bin/activate
cwltool example.cwl example-job.yaml

cd ~/cromwell_test
conda activate cromwell_test
cromwell run example.cwl -i example-job.yaml