For more information, see the user guide or the github repository.
NTV-pandas is referenced in the pandas ecosystem.
pandas provide IO converters but limitations are present:
- the multidimensional structure is not taken into account,
- the converters are not always reversible (conversion round trip),
- the converters take into account few data types,
- external data types (e.g. TableSchema types) are not included.
pandas does not have a tool for analyzing tabular structures and detecting integrity errors
The converter integrates:
- interfaces with Xarray, scipp, JSON,
- all the pandas
dtypeand the data-type associated to a JSON representation, - an always reversible conversion,
- an identification of tabular and multidimensional structure,
- a full compatibility with Table Schema specification.
The NTV-pandas converter uses the semantic NTV format to include a large set of data types in a JSON representation.
The NTV-pandas analyzer uses the TAB-analysis tool to analyze and measure the relationships between Fields in DataFrame and the TAB-dataset to identify integrity errors (example).
The multidimensional converter uses the NTV-numpy multidimensional format and interfaces.
NTV-pandas was developped originally in the NTV project
In the example below, a Dataframe is converted to Xarray and scipp.
The DataFrame resulting from these conversions are identical to the initial DataFrame (reversibility).
In [1]: import pandas as pd
import ntv_pandas as npd
In [2]: fruits = {'plants': ['fruit', 'fruit', 'fruit', 'fruit', 'vegetable', 'vegetable', 'vegetable', 'vegetable'],
'plts': ['fr', 'fr', 'fr', 'fr', 've', 've', 've', 've'],
'quantity': ['1 kg', '10 kg', '1 kg', '10 kg', '1 kg', '10 kg', '1 kg', '10 kg'],
'product': ['apple', 'apple', 'orange', 'orange', 'peppers', 'peppers', 'carrot', 'carrot'],
'price': [1, 10, 2, 20, 1.5, 15, 1.5, 20],
'price level': ['low', 'low', 'high', 'high', 'low', 'low', 'high', 'high'],
'group': ['fruit 1', 'fruit 10', 'fruit 1', 'veget', 'veget', 'veget', 'veget', 'veget'],
'id': [1001, 1002, 1003, 1004, 1005, 1006, 1007, 1008],
'supplier': ["sup1", "sup1", "sup1", "sup2", "sup2", "sup2", "sup2", "sup1"],
'location': ["fr", "gb", "es", "ch", "gb", "fr", "es", "ch"],
'valid': ["ok", "ok", "ok", "ok", "ok", "ok", "ok", "ok"]}
df_fruits = pd.DataFrame(fruits)
df_fruits.npd.analysis(distr=True).partitions() # return the list of partitions (a partition is a list of dimensions)
Out[2]:
[['plants', 'quantity', 'price level'],
['quantity', 'price level', 'supplier'],
['plants', 'location'],
['quantity', 'product'],
['supplier', 'location'],
['id']]
In [3]: kwargs = {'dims':['product', 'quantity'], 'datagroup': False, 'ntv_type': False, 'json_name': False}
xd_fruits = df_fruits.npd.to_xarray(**kwargs)
xd_fruits
Out[3]:
<xarray.Dataset> Size: 976B
Dimensions: (product: 4, quantity: 2)
Coordinates:
* product (product) <U7 112B 'apple' 'carrot' 'orange' 'peppers'
* quantity (quantity) <U5 40B '1 kg' '10 kg'
plants (product) <U9 144B 'fruit' 'vegetable' 'fruit' 'vegetable'
plts (product) <U2 32B 'fr' 've' 'fr' 've'
price level (product) <U4 64B 'low' 'high' 'high' 'low'
valid <U2 8B 'ok'
Data variables:
group (product, quantity) <U8 256B 'fruit 1' 'fruit 10' ... 'veget'
id (product, quantity) int64 64B 1001 1002 1007 ... 1004 1005 1006
location (product, quantity) <U2 64B 'fr' 'gb' 'es' ... 'ch' 'gb' 'fr'
price (product, quantity) float64 64B 1.0 10.0 1.5 ... 20.0 1.5 15.0
supplier (product, quantity) <U4 128B 'sup1' 'sup1' ... 'sup2' 'sup2'
In [4]: sc_fruits = df_fruits.npd.to_scipp(**kwargs)
sc_fruits
Out[4]:
<scipp.Dataset>
Dimensions: Sizes[product:4, quantity:2, ]
Coordinates:
* plants string [dimensionless] (product) ["fruit", "vegetable", "fruit", "vegetable"]
* plts string [dimensionless] (product) ["fr", "ve", "fr", "ve"]
* price level string [dimensionless] (product) ["low", "high", "high", "low"]
* product string [dimensionless] (product) ["apple", "carrot", "orange", "peppers"]
* quantity string [dimensionless] (quantity) ["1 kg", "10 kg"]
* valid string [dimensionless] () "ok"
Data:
group string [dimensionless] (product, quantity) ["fruit 1", "fruit 10", ..., "veget", "veget"]
id int64 [dimensionless] (product, quantity) [1001, 1002, ..., 1005, 1006]
location string [dimensionless] (product, quantity) ["fr", "gb", ..., "gb", "fr"]
price float64 [dimensionless] (product, quantity) [1, 10, ..., 1.5, 15]
supplier string [dimensionless] (product, quantity) ["sup1", "sup1", ..., "sup2", "sup2"]Reversibility:
In [5]: df_fruits_xd = npd.from_xarray(xd_fruits, **kwargs)
df_fruits_xd_sort = df_fruits_xd.reset_index()[list(df_fruits.columns)].sort_values(list(df_fruits.columns)).reset_index(drop=True)
df_fruits_sort = df_fruits.sort_values(list(df_fruits.columns)).reset_index(drop=True)
df_fruits_xd_sort.equals(df_fruits_sort)
Out[5]:
True
In [6]: df_fruits_sc = npd.from_scipp(sc_fruits, **kwargs)
df_fruits_sc_sort = df_fruits_sc.reset_index()[list(df_fruits.columns)].sort_values(list(df_fruits.columns)).reset_index(drop=True)
df_fruits_sort = df_fruits.sort_values(list(df_fruits.columns)).reset_index(drop=True)
df_fruits_sc_sort.equals(df_fruits_sort)
Out[6]:
TrueIn the example below, a DataFrame with multiple data types is converted to JSON (first to NTV format and then to Table Schema format).
The DataFrame resulting from these JSON conversions are identical to the initial DataFrame (reversibility).
With the existing JSON interface, these conversions are not possible.
In [1]: from shapely.geometry import Point
from datetime import date
import pandas as pd
import ntv_pandas as npd
In [2]: data = {'index': [100, 200, 300, 400, 500],
'dates::date': [date(1964,1,1), date(1985,2,5), date(2022,1,21), date(1964,1,1), date(1985,2,5)],
'value': [10, 10, 20, 20, 30],
'value32': pd.Series([12, 12, 22, 22, 32], dtype='int32'),
'res': [10, 20, 30, 10, 20],
'coord::point': [Point(1,2), Point(3,4), Point(5,6), Point(7,8), Point(3,4)],
'names': pd.Series(['john', 'eric', 'judith', 'mila', 'hector'], dtype='string'),
'unique': True }
In [3]: df = pd.DataFrame(data).set_index('index')
df.index.name = None
In [4]: df
Out[4]: dates::date value value32 res coord::point names unique
100 1964-01-01 10 12 10 POINT (1 2) john True
200 1985-02-05 10 12 20 POINT (3 4) eric True
300 2022-01-21 20 22 30 POINT (5 6) judith True
400 1964-01-01 20 22 10 POINT (7 8) mila True
500 1985-02-05 30 32 20 POINT (3 4) hector TrueJSON-NTV representation:
In [5]: df_to_json = df.npd.to_json()
pprint(df_to_json, compact=True, width=120, sort_dicts=False)
Out[5]: {':tab': {'index': [100, 200, 300, 400, 500],
'dates::date': ['1964-01-01', '1985-02-05', '2022-01-21', '1964-01-01', '1985-02-05'],
'value': [10, 10, 20, 20, 30],
'value32::int32': [12, 12, 22, 22, 32],
'res': [10, 20, 30, 10, 20],
'coord::point': [[1.0, 2.0], [3.0, 4.0], [5.0, 6.0], [7.0, 8.0], [3.0, 4.0]],
'names::string': ['john', 'eric', 'judith', 'mila', 'hector'],
'unique': True}}Reversibility:
In [6]: print(npd.read_json(df_to_json).equals(df))
Out[6]: TrueTable Schema representation:
In [7]: df_to_table = df.npd.to_json(table=True)
pprint(df_to_table['data'][0], sort_dicts=False)
Out[7]: {'index': 100,
'dates': '1964-01-01',
'value': 10,
'value32': 12,
'res': 10,
'coord': [1.0, 2.0],
'names': 'john',
'unique': True}
In [8]: pprint(df_to_table['schema'], sort_dicts=False)
Out[8]: {'fields': [{'name': 'index', 'type': 'integer'},
{'name': 'dates', 'type': 'date'},
{'name': 'value', 'type': 'integer'},
{'name': 'value32', 'type': 'integer', 'format': 'int32'},
{'name': 'res', 'type': 'integer'},
{'name': 'coord', 'type': 'geopoint', 'format': 'array'},
{'name': 'names', 'type': 'string'},
{'name': 'unique', 'type': 'boolean'}],
'primaryKey': ['index'],
'pandas_version': '1.4.0'}Reversibility:
In [9]: print(npd.read_json(df_to_table).equals(df))
Out[9]: True
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