lnnrtwttkhn / bibliography Goto Github PK

Please add the following publication:

• https://www.biorxiv.org/content/10.1101/2020.09.17.302521v2
• https://www.biorxiv.org/content/10.1101/2021.03.05.433967v1
• https://www.nejm.org/doi/full/10.1056/NEJMc1908881
• https://www.biorxiv.org/content/10.1101/2021.02.18.431803v1
• https://www.aeaweb.org/articles?id=10.1257/aer.20161574
• https://voyteklab.com/git/git-primer/
• https://www.kalzumeus.com/2011/10/28/dont-call-yourself-a-programmer/
• https://git-scm.com/book/en/v2
• https://chris.beams.io/posts/git-commit/#separate
• https://www.pnas.org/content/117/48/30079.short
• https://zonca.dev/2017/09/automated-testing-travis-ci-github.html
• https://www.nature.com/articles/s41422-020-00448-8
• https://www.sciencedirect.com/science/article/abs/pii/S0028393220303298
• https://onlinelibrary.wiley.com/doi/full/10.1002/hipo.23300
• https://secure.jbs.elsevierhealth.com/action/getSharedSiteSession?rc=1&redirect=https%3A%2F%2Fwww.cell.com%2Fcurrent-biology%2Fcomments%2FS0960-9822%2813%2900754-9
• https://www.biorxiv.org/content/10.1101/2021.01.28.428582v1
• https://www.frontiersin.org/articles/10.3389/frma.2020.586992/full
• https://www.nature.com/articles/s41562-020-01040-1
• https://psyarxiv.com/3aknq/
• https://www.sciencedirect.com/science/article/abs/pii/S0166432820306732

I think it will not happen too often, but it may be the case that the same first author published in the same year in the same journal. in this case, the current citation key formatting %a1%Y%c{Journal} cannot differentiate the entries in question.

Please add the following publication:

• https://www.biorxiv.org/content/10.1101/2020.12.11.421669v1
• https://www.biorxiv.org/content/10.1101/2020.12.11.419887v1
• https://www.nature.com/articles/s41467-020-14611-7

Please add the following publication:

• https://www.sciencedirect.com/science/article/pii/S0896627321010357
• https://www.nature.com/articles/s41583-022-00589-2.pdf
• https://www.nature.com/articles/s41467-022-30198-7
• https://www.nature.com/articles/d41586-019-00067-3
• https://onlinelibrary.wiley.com/doi/10.1002/job.2623
• https://elifesciences.org/articles/79627
• https://www.sciencedirect.com/science/article/pii/S0164121221002144

Please add the following publication:

• DOI: https://doi.org/10.1038/d41586-020-03422-x
• URL: <optionally, replace with URL, otherwise delete>
• author: <optionally, replace with author name, otherwise, delete>
• journal: <optionally, replace with journal name, otherwise, delete>

Please add the following publication:

• https://elifesciences.org/articles/79031
• https://www.sciencedirect.com/science/article/pii/S1364661322002108?dgcid=author
• https://www.biorxiv.org/content/10.1101/2022.09.25.509420v2
• https://www.nature.com/articles/s41593-022-01149-8
• https://www.gov.uk/government/publications/better-broader-safer-using-health-data-for-research-and-analysis
• https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1010476

Please add the following publication:

• https://guides.github.com/introduction/git-handbook/
• https://www.pnas.org/content/118/3/e2020698118?iss=3
• https://www.teaguehenry.com/strings-not-factors/2021/1/24/data-management-for-researchers-three-terrifying-tales
• https://www.frontiersin.org/articles/10.3389/fncir.2019.00052/full
• https://www.nature.com/articles/s41598-018-27472-4
• https://www.nature.com/articles/s41586-021-03184-0
• https://www.nature.com/articles/s41422-020-00448-8
• https://zenodo.org/record/4269795#.YBGZa1NKitg
• https://pubmed.ncbi.nlm.nih.gov/16157284/
• https://the-turing-way.netlify.app/reproducible-research/testing/testing-types.html
• https://www.biorxiv.org/content/10.1101/2021.01.21.427464v1
• https://astralcodexten.substack.com/p/still-alive
• https://www.biorxiv.org/content/10.1101/2021.01.16.426538v1
• https://bpspsychub.onlinelibrary.wiley.com/doi/10.1111/bjop.12491
• https://www.biorxiv.org/content/10.1101/2021.01.16.426538v1
• https://psyarxiv.com/wxn58
• https://psychnerdjae.github.io/into-the-tidyverse/
• https://elifesciences.org/articles/59907
• https://www.biorxiv.org/content/10.1101/2021.01.14.426741v1
• https://www.biorxiv.org/content/10.1101/2021.01.15.426639v1
• https://psyarxiv.com/jqw35/
• https://www.degruyter.com/document/doi/10.1515/nf-2020-0037/html

Please add the following publication:

• https://rszalski.github.io/magicmethods/
• https://www.tandfonline.com/doi/abs/10.1080/09658211.2021.1896737?af=R&journalCode=pmem20
• https://elifesciences.org/articles/08105
• https://www.nature.com/articles/s41598-021-84232-7
• https://www.biorxiv.org/content/10.1101/2021.03.09.434621v1.full.pdf
• https://www.sciencedirect.com/science/article/abs/pii/S136466130800137X?casa_token=Kwlggi85K04AAAAA:u94KDvX-4F2BqFAmZ-L49WkOhu_-yVpXKQEmiljK1Fg5K6mYj-4ltqUIBhuqimjuPcCKhdxS0vc
• https://academic.oup.com/sleepadvances/article/1/1/zpab002/6124581
• https://www.cambridge.org/core/journals/psychological-medicine/article/abs/latent-cause-inference-during-extinction-learning-in-traumaexposed-individuals-with-and-without-ptsd/0C9F33A2C608F1584AE23048A7937D53#.YEZxFPbt9tQ.twitter
• https://www.nature.com/articles/s41593-021-00807-7#article-info
• https://www.nature.com/articles/s41583-021-00451-x
• https://openai.com/blog/multimodal-neurons/
• https://www.nature.com/articles/nature03687

Please add the following publication:

• https://arxiv.org/abs/2104.09743
• https://www.nature.com/articles/s41467-021-24927-7
• https://arxiv.org/pdf/2107.12544v1.pdf
• https://www.sciencedirect.com/science/article/abs/pii/S0010027721000639?via%3Dihub
• https://secure.jbs.elsevierhealth.com/action/getSharedSiteSession?redirect=https%3A%2F%2Fwww.cell.com%2Fneuron%2Ffulltext%2FS0896-6273%2821%2900461-X&rc=0&

idea

everytime there was a push to the repo, the .bib file should be checked for errors and a report should be generated

resources

• https://github.com/Pezmc/BibLatex-Check
• https://github.com/ejolly/biblib

Please add the following publication:

• https://www.biorxiv.org/content/10.1101/2020.01.16.908889v1.abstract
• https://www.biorxiv.org/content/10.1101/2020.04.13.039826v1.abstract
• https://www.sciencedirect.com/science/article/abs/pii/S0149763420304838
• https://www.biorxiv.org/content/10.1101/2020.12.21.423856v1
• https://elifesciences.org/articles/62668
• https://www.cell.com/neuron/fulltext/S0896-6273(20)30929-6?dgcid=raven_jbs_aip_email#articleInformation
• https://psyarxiv.com/2bxju
• https://www.sciencedirect.com/science/article/pii/S0896627320309661#!
• https://journals.sagepub.com/doi/full/10.1177/2398212820979772
• https://www.nature.com/articles/s41586-020-03073-y
• https://www.nature.com/articles/s41586-020-03061-2#disqus_thread
• https://www.biorxiv.org/content/10.1101/2020.12.24.424353v1
• https://www.biorxiv.org/content/10.1101/2020.12.23.424258v1
• https://psyarxiv.com/9uvqp
• https://www.biorxiv.org/content/10.1101/2020.12.24.424371v1

Please add the following publication:

• https://elifesciences.org/articles/62500
• https://www.sciencedirect.com/science/article/pii/S0896627320309661
• https://www.biorxiv.org/content/10.1101/2020.12.30.424873v1
• https://www.biorxiv.org/content/10.1101/2020.12.30.424858v1
• https://www.nature.com/articles/s41562-020-00967-9
• https://www.biorxiv.org/content/10.1101/2020.12.28.424600v1
• https://www.biorxiv.org/content/10.1101/2020.12.29.424583v1
• https://www.biorxiv.org/content/10.1101/2020.12.29.424651v1
• https://www.biorxiv.org/content/10.1101/2020.12.27.424480v1
• https://www.sciencedirect.com/science/article/pii/S0074774220301549
• https://www.pnas.org/content/118/2/e2017032118
• https://www.pnas.org/content/117/45/28463
• https://www.jneurosci.org/content/early/2020/12/16/JNEUROSCI.0873-20.2020.abstract
• https://www.nature.com/articles/s41586-020-03051-4
• https://www.medrxiv.org/content/10.1101/2020.12.24.20248802v1
• https://www.frontiersin.org/articles/10.3389/fnhum.2018.00037/full
• https://www.frontiersin.org/articles/10.3389/fnhum.2013.00291/full

Please add the following publication:

• DOI:
• URL: https://www.biorxiv.org/content/10.1101/2020.12.09.416438v1.full.pdf
• author: <optionally, replace with author name, otherwise, delete>
• journal: <optionally, replace with journal name, otherwise, delete>

thanks @ozika for the suggestion!

example text could be something like this:

A CI runs this Makefile that first executes this Python script that parses the bibliography.bib file and write a .csv of all the entries that is passed on to this .Rmd file that renders to html which is deployed to GitHub pages :)

Please add the following publication:

• DOI:
• URL: https://www.nature.com/articles/s41467-020-19828-0
• author: <optionally, replace with author name, otherwise, delete>
• journal: <optionally, replace with journal name, otherwise, delete>

Please add the following publication:

• https://jov.arvojournals.org/article.aspx?articleid=2772383#.YFJurgE-kCA.twitter
• https://www.nature.com/articles/s41586-021-03344-2
• https://psyarxiv.com/6btc3
• https://www.sciencedirect.com/science/article/abs/pii/S0896627321001203?dgcid=author
• https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0053374
• https://www.nature.com/articles/d41586-019-03335-4
• https://www.biorxiv.org/content/10.1101/2021.03.11.434452v1

Please add the following publication:

• DOI:
• URL: https://www.nature.com/articles/s41567-020-0924-7
• author: <optionally, replace with author name, otherwise, delete>
• journal: <optionally, replace with journal name, otherwise, delete>

Please add the following publication:

• https://www.eneuro.org/content/9/2/ENEURO.0361-21.2022/tab-figures-data
• https://www.nature.com/articles/s41597-022-01173-0
• https://www.nature.com/articles/s41537-022-00247-7
• https://www.nature.com/articles/d41586-022-00928-4
• https://direct.mit.edu/neco/article-abstract/33/11/2908/107071/Replay-in-Deep-Learning-Current-Approaches-and?redirectedFrom=fulltext
• https://drive.google.com/file/d/1jafqR4-oTgUpfK-tHy63w87sCEPPk-RW/view
• https://www.sciencedirect.com/science/article/abs/pii/S0010027722000919?dgcid=author
• https://www.cell.com/action/consumeSharedSessionAction?I2KBRCK=1&JSESSIONID=aaau9LVuO8jdW_j9PoHay&MAID=0byfDW98IzzldW44pBnRpQ%3D%3D&SERVER=WZ6myaEXBLF%2B9vQ18y9JMw%3D%3D&ORIGIN=323483960&RD=RD&exp=zIEwfYNeATJr5Lzhh7RvNQ%253D%253D
• https://www.pnas.org/doi/10.1073/pnas.2102242118
• http://neuroimaging-data-science.org/content/001-introduction/001-introduction.html
• https://www.jneurosci.org/content/jneuro/early/2022/03/28/JNEUROSCI.1120-21.2022.full.pdf
• https://psyarxiv.com/729qt
• https://psyarxiv.com/qnpw6
• https://zenodo.org/record/5793611
• https://www.cell.com/current-biology/fulltext/S0960-9822(22)00405-5
• https://www.nature.com/articles/s41586-022-04560-0

Please add the following publication:

• https://www.sciencedirect.com/science/article/pii/S0896627321006206?dgcid=author
• https://www.sciencedirect.com/science/article/abs/pii/S0166223621001442
• https://www.biorxiv.org/content/10.1101/2021.02.22.432340v1
• https://www.nature.com/articles/s41583-021-00499-9
• https://www.biorxiv.org/content/10.1101/2021.08.29.458114v1
• https://psyarxiv.com/63fq8/
• https://www.biorxiv.org/content/10.1101/2021.08.25.457707v1

ran out of travis credits for public repos - for github actions they are free

Please add the following publication:

• https://www.biorxiv.org/content/10.1101/2021.03.21.436284v1?rss=1
• https://f1000research.com/articles/9-295/v2
• https://www.nature.com/articles/s43588-021-00048-5
• https://journals.sagepub.com/doi/10.1177/0956797621989730#
• https://dev.to/karaluton/explain-like-i-m-five-git-rebase-vs-merging-1k69
• https://psyarxiv.com/b5z8a/
• https://www.nature.com/articles/s41593-021-00816-6

Please add the following publication:

• https://www.biorxiv.org/content/10.1101/2022.03.23.485480v1.article-metrics
• https://www.frontiersin.org/articles/10.3389/fncom.2022.757244/full
• https://psyarxiv.com/ybzu9/
• https://arxiv.org/pdf/2203.09250.pdf
• https://debruine.github.io/data-code-tips/
• https://www.biorxiv.org/content/10.1101/2022.03.14.484293v1
• https://journals.sagepub.com/doi/10.1177/23982128221075430
• https://www.nature.com/articles/s41597-022-01163-2
• https://royalsocietypublishing.org/doi/10.1098/rsos.201494
• https://www.nature.com/articles/s41593-022-01020-w
• https://www.nature.com/articles/s41562-022-01302-0
• https://www.nature.com/articles/s41597-022-01143-6
• https://pubmed.ncbi.nlm.nih.gov/8576689/

Bdsk-File- and Bdsk-Url- fields are BibDesk-specific paths to corresponding paper pdf files on my local machine. Thus, they are irrelevant to other users. Therefore, it's maybe a good idea to remove them? But then the links to the pdf would be lost...

See here for more information.

Please add the following publication:

• https://researchintegrityjournal.biomedcentral.com/articles/10.1186/s41073-020-00101-
• https://www.nature.com/articles/s41586-020-2923-3
• https://english.elpais.com/society/2020-10-28/a-room-a-bar-and-a-class-how-the-coronavirus-is-spread-through-the-air.html
• https://www.sciencedirect.com/science/article/pii/S0896627320308096
• https://handbook-public.themusiclab.org/lab-policies/project-management
• https://www.sciencemag.org/news/2021/01/new-mandate-highlights-costs-benefits-making-all-scientific-articles-free-read
• https://pubmed.ncbi.nlm.nih.gov/17638506/
• https://elifesciences.org/articles/63035
• https://merely-useful.tech/py-rse/index.html

At the moment, both Neuron and NeuroImage are abbreviated with N when creating the citation keys. Ideally, NeuroImage could be abbreviated using NI. It is possible when NeuroImage is written Neuro Image (using a space). However, that is not the standard way of the journal name. A solution could be to update citation keys post-hoc? Any other solutions?

I discovered that one of the citation keys did not match the actual publication year (O'Keefe & Nadel, The Hippocampus as a Cognitive Map).

I tried to fix by regenerating the publication key in question but this did not change anything.

I also tried to change the citation key scheme back-and-forth but again this did not change the key.

Just flagging this issue for later here. I think I will change it manually for now.

Please add the following publication:

• https://www.sciencedirect.com/science/article/pii/S0896627310002321
• https://www.pnas.org/content/101/36/13124
• https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4634641/
• https://www.sciencemag.org/news/2020/11/9500-nature-journals-will-now-make-your-paper-free-read
• https://www.biorxiv.org/content/10.1101/2020.11.23.395012v1
• https://www.tandfonline.com/doi/full/10.1080/10691898.2020.1848485
• https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6190062/
• https://www.biorxiv.org/content/10.1101/2020.11.17.381913v1
• https://www.mitpressjournals.org/doi/full/10.1162/NECO_a_00538
• https://www.nature.com/articles/s42254-020-00249-3.epdf?sharing_token=ydN0sAvZYg5fU5Vr1_eDStRgN0jAjWel9jnR3ZoTv0OEBD_fkvXeW5H3ljUwkv-5KHNqNxjPTHfBJav_9gii30ltqysWmjCOiguraA9aKH29y6JjMWWdF_h4ppmdkIUijSYmNgggvAyE7sbDmHKB4AibX_77dJvypJ1MJLhuLmE%3D
• https://www.sciencedirect.com/science/article/pii/S258900422030969X#!
• https://www.nature.com/articles/d41586-020-03189-1?utm_source=twitter&utm_medium=social&utm_content=organic&utm_campaign=NGMT_USG_JC01_GL_Nature
• https://www.sciencedirect.com/science/article/abs/pii/S0149763420305868
• https://osf.io/preprints/metaarxiv/7x9vy
• https://www.sciencedirect.com/science/article/pii/S2352154620301480?dgcid=author
• https://www.jneurosci.org/content/26/51/13143
• https://www.biorxiv.org/content/10.1101/2020.11.28.402123v1
• https://www.britishecologicalsociety.org/wp-content/uploads/2019/06/BES-Guide-Reproducible-Code-2019.pdf
• https://www.sciencedirect.com/science/article/pii/S0301008220301957
• https://www.sciencedirect.com/science/article/abs/pii/S095943882030132X
• https://onlinelibrary.wiley.com/doi/abs/10.1002/hipo.23282?af=R
• https://www.nature.com/articles/s41593-020-00734-z
• https://www.sciencedirect.com/science/article/pii/S2352154620301467?via%3Dihub
• https://www.natureindex.com/news-blog/three-ways-researchers-science-can-avoid-common-programming-bugs-errors
• https://www.nature.com/articles/s41386-020-00899-y
• https://www.nature.com/articles/s41386-020-00899-y
• https://www.cell.com/cell/fulltext/S0092-8674(20)31302-7
• https://www.cell.com/cell/fulltext/S0092-8674(20)31302-7
• https://www.nature.com/articles/s41593-020-0696-5
• https://www.nature.com/articles/s41586-020-2880-x
• https://www.sciencedirect.com/science/article/pii/S0959438820301343?via%3Dihub
• https://www.sciencedirect.com/science/article/pii/S0959438820301343?via%3Dihub
• https://www.sciencedirect.com/science/article/abs/pii/S0023969012000525?via%3Dihub
• https://www.biorxiv.org/content/10.1101/2020.10.20.346130v1
• https://www.nature.com/articles/nature03721
• https://psyarxiv.com/4mrxy/
• https://www.cell.com/trends/cognitive-sciences/fulltext/S1364-6613(20)30222-9
• https://www.sciencedirect.com/science/article/pii/S0010945220303865
• https://www.biorxiv.org/content/10.1101/2020.12.11.422162v1
• https://www.nature.com/articles/s42256-020-00277-9

Some people ask me "Why don't you just use Mendeley"? If that happens again in the future, I can refer them to the list of advantages of BibDesk.

Please add the following publication:

• https://psyarxiv.com/df7ga
• https://www.biorxiv.org/content/10.1101/2021.03.21.436284v1
• https://pubmed.ncbi.nlm.nih.gov/21178116/
• https://www.sciencedirect.com/science/article/abs/pii/S096098222030292X
• https://www.nature.com/articles/nn.4466
• https://www.sciencedirect.com/science/article/abs/pii/S1364661321000541#!
• https://www.biorxiv.org/content/10.1101/2021.03.18.435979v1
• https://www.nature.com/articles/s41593-021-00809-5
• https://www.bayesianspectacles.org/#/article/3842
• https://www.pnas.org/content/pnas/118/11/e2023265118.full

see here and here

Please add the following publication:

• https://www.biorxiv.org/content/10.1101/2020.01.16.908731v2
• https://www.biorxiv.org/content/10.1101/2020.11.11.378141v1
• https://secure.jbs.elsevierhealth.com/action/consumeSsoCookie?redirectUri=https%3A%2F%2Fwww.cell.com%2Faction%2FconsumeSharedSessionAction%3FJSESSIONID%3DaaakSPj_DM-ha-gQaxcDx%26MAID%3DYiHwEhAsvA4r4Ok4RuLf3Q%253D%253D%26SERVER%3DWZ6myaEXBLF%252B9vQ18y9JMw%253D%253D%26ORIGIN%3D950672033%26RD%3DRD&code=null&acw=Secure;SameSite=None&utt=
• https://www.nature.com/articles/473285a
• https://royalsocietypublishing.org/doi/10.1098/rstb.2019.0699
• https://www.biorxiv.org/content/10.1101/2020.01.16.908731v2
• https://arxiv.org/abs/2011.11015
• https://www.biorxiv.org/content/10.1101/2020.12.15.422817v1
• https://www.sciencedirect.com/science/article/abs/pii/S0022103120303930
• https://www.tandfonline.com/doi/full/10.1080/10691898.2020.1860725
• https://www.scientificamerican.com/article/we-must-tear-down-the-barriers-that-impede-scientific-progress/
• https://www.chronicle.com/article/grades-can-hinder-learning-what-should-professors-use-instead/
• https://www.cultofpedagogy.com/episode-13/
• https://www.biorxiv.org/content/10.1101/2020.12.17.423193v1
• https://www.biorxiv.org/content/10.1101/2020.12.17.423272v1
• http://fperez.org/papers/ipython07_pe-gr_cise.pdf
• https://www.biorxiv.org/content/10.1101/2020.12.18.423495v1
• https://www.nature.com/articles/s41586-019-1923-7.epdf?author_access_token=Z_KaZKDqtKzbE7Wd5HtwI9RgN0jAjWel9jnR3ZoTv0MCcgAwHMgRx9mvLjNQdB2TlQQaa7l420UCtGo8vYQ39gg8lFWR9mAZtvsN_1PrccXfIbc6e-tGSgazNL_XdtQzn1PHfy21qdcxV7Pw-k3htw%3D%3D
• https://www.nature.com/articles/s41593-020-00761-w
• https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1008317&rev=1
• https://www.pnas.org/content/118/1/e2011266118
• https://www.nature.com/articles/s41467-020-18864-0

Please add the following publication:

Largely related to data sharing

• https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0272845
• https://www.nature.com/articles/d41586-022-03133-5
• https://iopscience.iop.org/article/10.1088/1748-9326/ac5cf8
• https://www.nature.com/articles/s41597-021-00981-0
• https://www.jclinepi.com/article/S0895-4356(22)00141-X/pdf
• https://www.cell.com/current-biology/fulltext/S0960-9822(13)01400-0?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS0960982213014000%3Fshowall%3Dtrue
• https://arxiv.org/abs/2208.04895
• https://www.sciencedirect.com/science/article/abs/pii/S245190222200341X?via%3Dihub
• https://online.ucpress.edu/collabra/article/8/1/57545/195042/Ten-Strategies-to-Foster-Open-Science-in

Please add the following publication:

• https://www.biorxiv.org/content/10.1101/2022.06.13.495935v1
• https://www.nature.com/articles/s44159-022-00068-6
• https://pubs.acs.org/doi/full/10.1021/acs.jcim.0c01389#
• https://psycnet.apa.org/record/2005-12019-002
• https://royalsocietypublishing.org/doi/10.1098/rsos.201494
• https://www.biorxiv.org/content/10.1101/2022.06.03.494671v1
• https://www.biorxiv.org/content/10.1101/2022.05.18.492543v1
• https://arxiv.org/abs/1410.0846
• https://www.nature.com/articles/s41597-022-01334-1

see here: https://app.travis-ci.com/github/lnnrtwttkhn/bibliography/builds/239212963

Please add the following publication:

• https://www.biorxiv.org/content/10.1101/2021.07.15.452506v1
• https://www.biorxiv.org/content/10.1101/2021.07.14.452398v1
• https://www.nature.com/articles/s41467-021-24357-5
• https://www.nature.com/articles/s41583-018-0031-2
• https://www.nature.com/articles/s41583-021-00479-z
• https://psyarxiv.com/tb72e
• https://www.theoj.org/joss-papers/joss.03262/10.21105.joss.03262.pdf
• https://www.biorxiv.org/content/10.1101/2021.06.30.450026v1
• https://journals.sagepub.com/doi/full/10.1177/1745691620970586
• https://www.sciencedirect.com/science/article/pii/S0004370221000862
• https://www.nature.com/articles/s41467-021-23671-2
• https://www.nature.com/articles/d41586-020-02057-2
• https://arxiv.org/abs/2008.08814
• https://www.cell.com/neuron/fulltext/S0896-6273(21)00374-3?rss=yes
• https://www.cell.com/trends/cognitive-sciences/fulltext/S1364-6613(21)00128-5?dgcid=raven_jbs_aip_email

Please add the following publication:

• https://www.sciencedirect.com/science/article/pii/S1053811921002421?via%3Dihub
• https://www.nature.com/articles/s41598-021-85842-x
• https://elifesciences.org/articles/63226
• http://www.the100.ci/2018/06/26/the-tyranny-of-metrics-in-science-evaluation/
• https://www.nature.com/articles/nn.4486
• https://www.biorxiv.org/content/10.1101/2021.03.16.435524v1
• https://www.nature.com/articles/s42003-021-01863-2
• https://www.pnas.org/content/118/10/e2011809118

problematic for paper like van horn2013n.pdf.

maybe the discussion in this link helps.

could potentially be set to sudo false.

Please add the following publication:

• https://www.pnas.org/content/117/39/24154.short
• https://www.medrxiv.org/content/10.1101/2021.02.27.21252572v1.full
• https://science.sciencemag.org/content/366/6464/447.full
• https://www.nature.com/articles/s43588-020-00015-6
• https://pubmed.ncbi.nlm.nih.gov/23046981/
• https://www.nature.com/articles/nn.2886/
• https://www.biorxiv.org/content/10.1101/2021.01.12.426428v1
• https://www.cell.com/trends/neurosciences/fulltext/S0166-2236(20)30213-7
• https://www.sciencedirect.com/science/article/pii/0301008279900054?via%3Dihub
• https://www.nature.com/articles/s41467-020-20655-6
• https://onlinelibrary.wiley.com/doi/pdf/10.1002/hipo.23295

Please add the following publication:

• DOI:
• URL: https://www.biorxiv.org/content/10.1101/2020.12.06.413542v1
• author: <optionally, replace with author name, otherwise, delete>
• journal: <optionally, replace with journal name, otherwise, delete>

build failed: https://app.travis-ci.com/github/lnnrtwttkhn/bibliography/builds/240569123

 make

python3 code/parser.py

Traceback (most recent call last):

  File "code/parser.py", line 4, in <module>

    import bibtexparser

  File "/home/travis/.local/lib/python3.5/site-packages/bibtexparser/__init__.py", line 30, in <module>

    from . import bibdatabase, bibtexexpression, bparser, bwriter, latexenc, customization

  File "/home/travis/.local/lib/python3.5/site-packages/bibtexparser/bibtexexpression.py", line 1, in <module>

    import pyparsing as pp

  File "/home/travis/.local/lib/python3.5/site-packages/pyparsing/__init__.py", line 112, in <module>

    from .util import *

  File "/home/travis/.local/lib/python3.5/site-packages/pyparsing/util.py", line 16

    _all_names: List[str] = []

              ^

SyntaxError: invalid syntax

Makefile:5: recipe for target 'bibliography.csv' failed

Please add the following publication:

• https://arxiv.org/abs/2108.07839
• https://www.sciencedirect.com/science/article/abs/pii/S0960982221010514?dgcid=coauthor
• https://www.cell.com/current-biology/fulltext/S0960-9822(21)01048-4?rss=yes
• https://statsthinking21.github.io/statsthinking21-core-site/doing-reproducible-research.html#how-we-think-science-should-work
• https://www.nature.com/articles/s41386-021-01123-1
• https://www.jneurosci.org/content/41/32/6933
• https://www.biorxiv.org/content/10.1101/2021.08.11.455977v1
• https://www.nature.com/articles/s41593-021-00907-4.pdf
• https://www.nature.com/articles/s41586-021-03811-w
• https://arxiv.org/pdf/2108.02497.pdf
• https://www.nature.com/articles/s41467-021-24907-x
• https://www.nature.com/articles/s41593-021-00884-8
• https://psyarxiv.com/k8j94
• https://valdanchev.github.io/reproducible-data-science-python/open_reproducible_workflows.html
• https://www.biorxiv.org/content/10.1101/2021.06.14.448422v1.full.pdf
• https://www.science.org/doi/abs/10.1126/science.abe2629
• https://www.nature.com/articles/s41467-021-23829-y
• https://www.cell.com/cell-reports/fulltext/S2211-1247(21)00539-8
• https://www.biorxiv.org/content/10.1101/2021.06.06.447249v1
• https://psyarxiv.com/cnuy7/
• https://www.biorxiv.org/content/10.1101/2021.06.04.447085v1
• https://www.nature.com/articles/s41467-021-23508-y
• https://elifesciences.org/articles/60988
• https://www.biorxiv.org/content/10.1101/2021.05.13.444067v1
• https://www.sciencedirect.com/science/article/pii/S0960982221004632
• https://reproducibility.stanford.edu/copy-pasting-your-methods-section-is-good-actually/
• https://www.nature.com/articles/s41593-021-00839-z
• https://www.biorxiv.org/content/10.1101/2021.04.23.441128v1
• https://www.biorxiv.org/content/10.1101/2021.04.23.440002v2
• https://www.nature.com/articles/s41586-021-03452-z
• https://www.sciencedirect.com/science/article/pii/S0960982221004644
• https://www.nature.com/articles/s41593-021-00835-3
• https://www.sciencedirect.com/science/article/abs/pii/S0960982221001639?dgcid=author#bib4
• https://www.sciencedirect.com/science/article/abs/pii/S0960982221001639?dgcid=author#bib4
• https://www.biorxiv.org/content/10.1101/2021.07.29.453342v1
• https://www.cell.com/neuron/fulltext/S0896-6273(20)30353-6
• https://psyarxiv.com/zn7vt/
• https://www.science.org/doi/abs/10.1126/science.abg2009

Please add the following publication:

• DOI:
• URL: https://www.biorxiv.org/content/10.1101/2020.11.30.404491v1
• author: <optionally, replace with author name, otherwise, delete>
• journal: <optionally, replace with journal name, otherwise, delete>

Please add the following publication:

• https://www.nature.com/articles/s41597-022-01143-6
• https://journals.physiology.org/doi/abs/10.1152/jn.00454.2022
• https://www.nature.com/articles/s41559-023-02008-w
• https://www.biorxiv.org/content/10.1101/2023.02.23.529770v1
• https://arxiv.org/pdf/2302.11351.pdf
• https://www.nature.com/articles/d41586-023-00486-3
• https://psyarxiv.com/5yexm/
• https://neurostatscyrilpernet.blogspot.com/2023/02/gdpr-for-research-demystified.html?m=1

Please add the following publication:

• https://www.nature.com/articles/d41586-022-02283-w
• https://www.nature.com/articles/s41593-022-01138-x
• https://psyarxiv.com/sezup/
• https://www.science.org/doi/10.1126/science.aac4716
• https://www.science.org/doi/10.1126/science.359.6377.725
• https://www.nature.com/articles/533452a
• https://zenodo.org/record/4740053#.YPXm2xMzatg
• https://jon-e.net/dissertation/assets/swarmpunk_repo.pdf#page97
• https://elifesciences.org/articles/67995
• https://peerj.com/articles/cs-86/
• https://bausteine-fdm.de/article/download/8435/8258/18911
• https://www.biorxiv.org/content/10.1101/2022.06.03.494671v1.full.pdf

Please add the following publication:

• https://psyarxiv.com/2fwup/
• https://www.biorxiv.org/content/10.1101/2022.05.07.491015v1

At the moment, paper pdfs are kept in a separate folder (which is not part of the repo). Ideally, theses files will also be put under version control, maybe using git-annex. I need to figure out how to use this tool, in more detail but it looks like it could be used for that purpose.

• https://www.science.org/doi/10.1126/science.abh4340
• https://issuu.com/zeitmagazine/docs/campus_ratgeber_heft_pdf
• https://www.nature.com/articles/s41597-022-01710-x
• https://arxiv.org/abs/2210.04520
• https://arxiv.org/pdf/1908.08737.pdf
• https://www.nature.com/articles/s41597-022-01710-x
• https://arxiv.org/abs/2210.04275
• https://arxiv.org/abs/2209.07863
• https://psyarxiv.com/rsn5y/
• https://researchintegrityjournal.biomedcentral.com/articles/10.1186/s41073-021-00118-2

Please add the following publication:

• DOI:
• URL: https://www.pnas.org/content/early/2020/12/09/2008852117
• author: <optionally, replace with author name, otherwise, delete>
• journal: <optionally, replace with journal name, otherwise, delete>

Please add the following publication:

• https://www.annualreviews.org/doi/pdf/10.1146/annurev-psych-020821-114157
• https://www.cell.com/trends/cognitive-sciences/fulltext/S1364-6613(21)00310-7
• https://www.nature.com/articles/s41583-021-00548-3
• https://www.sciencedirect.com/science/article/pii/S2665945X2200002X
• https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0263023
• https://www.cell.com/neuron/fulltext/S0896-6273(22)00109-X?_returnURL=https%3A%2F%2Flinkinghub.elsevier.com%2Fretrieve%2Fpii%2FS089662732200109X%3Fshowall%3Dtrue#.Yg5570MNRU0.twitter