ljdursi / consensus_call_docker Goto Github PK
View Code? Open in Web Editor NEWMake PCAWG consensus calls given input VCFs
Make PCAWG consensus calls given input VCFs
The build_dbs.sh
script connects to the COSMIC SFTP server to download COSMIC data files. The SFTP server will be deprecated from COSMIC v86 onwards, having been replaced by a new download endpoint in the website.
SFTP accounts for new COSMIC users will not be created after the v86 release, so those users will not be able to use COSMIC data with this tool. You might want to update build_dbs.sh
to use the new endpoint. Contact the COSMIC helpdesk if you need any help with the conversion.
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