This project is for the tumor area detection on whole slide images(WSI), using Python 3, keras, and Tensorflow.
效果图
The repository includes:
- Preprocess
- Train and predict
- Postprocess
- Random forest
- Python 3.6.x or above
- Tensoflow 1.6.x
- Openslide
- sk-learn
- sk-image
- open-cv
- numpy, sciPy
There are have broad categories:
- Finding Region of Interest(ROI)
- Exatract Patches from ROI
- Data augumentation
get _ mask.py
get _ patches.py
Patches classfier for normal and tumor patch
train _ images _ classifier.py
evl _ images.py
There are have broad categories:
- get consecutive patches for heatmaps
- get heatmaps for all trainset slide
This is slide based classifier using what we get in above steps!!