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adjutant

Runs a pubmed query, returns results and allows user to explore high-level structure of returned documents

ai-blog

Repository for the RStudio AI Blog (formerly: TensorFlow for R Blog)

altre

ALTered Regulatory Elements

analyzer

An R Shiny app that accepts a CSV file with data, and outputs high level regression analysis.

appscangeo

Source code for ScanGEO Shiny App

atlantic

Integrated analysis of genomes, transcriptomes, proteomes and drug responses of cancer cell lines (CCLs) is an emerging approach to uncover molecular mechanisms of drug action. We extend this paradigm to measuring proteome activity landscapes by acquiring and integrating quantitative data for 10,000 proteins and 55,000 phosphorylation sites (p-sites) from 125 CCLs. These data are used to contextualize proteins and p-sites and predict drug sensitivity. For example, we find that Progesterone Receptor (PGR) phosphorylation is associated with sensitivity to drugs modulating estrogen signaling such as Raloxifene. We also demonstrate that Adenylate kinase isoenzyme 1 (AK1) inactivates antimetabolites like Cytarabine. Consequently, high AK1 levels correlate with poor survival of Cytarabine-treated acute myeloid leukemia patients, qualifying AK1 as a patient stratification marker and possibly as a drug target. We provide an interactive web application termed ATLANTiC (http://atlantic.proteomics.wzw.tum.de), which enables the community to explore the thousands of novel functional associations generated by this work.

awesome-r

A curated list of awesome R packages, frameworks and software.

awesome-rshiny

An awesome R-shiny list!

bears_analyses

Examples of kallisto + sleuth

bmdx

breastcancerambs_genemetabolite_data

cerebro

Visualization of scRNA-seq data.

cerebroapp

R package containing the Cerebro application.

checkmyindex

Search for a set of compatible indexes for your sequencing experiment

chippcr

Toolkit of helper functions to pre-process amplification data

chordomics

Interactive visualisation and data annotation for meta-omics data

cipr-package

Cluster Identity Predictor (R package implementation)

cipr-shiny

Repository for Shiny implementation of CIPR

citefuse

CiteFuse:

clustergrammer

An interactive heatmap visualization built using D3.js

clusterprofiler

:bar_chart:statistical analysis and visualization of functional profiles for genes and gene clusters

cn_mooc_dl

**大学MOOC，学堂在线，网易云课堂，下载

coranalyzer

Shiny based application for correlation analysis

data606

Statistics and Probability for Data Analytics

data_explorer

Shiny app

ddpcrclust

A package for automated quantification of non-orthogonal, multiplexed ddPCR data

desktopdeployr

A framework for deploying self-contained R-based applications to the desktop

deviumweb

Interactive multivariate data analysis in R implemented in shiny.

diffnetfdr

DiffNetFDR

dnabarcodecompatibility_shiny

Web interface for DNABarcodeCompatibility