Comments (8)
I am getting error with raw_reads_filter_v05.pl
Please give your suggestions to rectify this error
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Please give a few examples of your input fastq files. I can not determine what was going on there based on the message you posted.
gzip -dc /home/sridhar/mito/release_MitoZ_v2.3/TS-COR_R1.fq.gz | head -n 20 > test.1.fq
gzip -dc /home/sridhar/mito/release_MitoZ_v2.3/TS-COR_R2.fq.gz | head -n 20 > test.2.fq
Then send me the test.1.fq
and test.2.fq
files.
PS.
- The mitochondrial genetic code for vertebrate is
2
, not1
. - If you prefer to install MitoZ from source code, please run the test data first (https://github.com/linzhi2013/MitoZ/tree/master/test), to make sure everything is fine. Otherwise, please use Docker version.
from mitoz.
from mitoz.
Hi Dr. Srimku,
There was a typo in your command.
The correct one is guanliangmeng/mitoz:2.3
Not guangliangmeng/mitoz:2.3
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