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liangzhw6's Projects

bambi-its icon bambi-its

ITS analysis on stool samples from preterm babies

configs icon configs

Config files used to define parameters specific to compute environments at different Institutions

deml icon deml

Maximum likelihood demultiplexing

easv-pipeline-for-515y-926r icon easv-pipeline-for-515y-926r

This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools

feast icon feast

Fast expectation maximization for microbial source tracking

qiime2_16sv4_pipeline icon qiime2_16sv4_pipeline

A bash scripts for running QIIME2 analysis on 16SV4 amplicon analysis on bacterial sequences generated with Illumina MiSeq. The pipeline utilizes the HPCC and thei'r specific job submission commands.

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