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open-rr-bioinfo-best-practice's Introduction

Best practices in bioinformatics research: open source software and reproducibility

  • 2015/16 Bioinfo NST Part II BBS Minor Subject
  • When: 18/01/2016 15:00 - 16:00
  • Where: Pharmacology Lecture Theater, Tennis Court Road
  • Who: Laurent Gatto

Lecture/practical content

What is open science (data, source/code, access), and how can we enable it? What is reproducible research, and why do we need it and how can we implement it?

Tools, databases and resources covered (if applicable)

Overview/demonstration of current tools enabling reproducible research: Rmd/LaTeX, knitr/Sweave, Jupyter notebooks, org mode.

Learning objectives

Familiarise students with concepts and tools of open science and reproducible research.

Course material

  1. Introduction
  2. Open Science
  3. Reproducible research
  4. Conclusions
  5. References

As a single pdf.

Licence

This material is released under a CC-BY-SA licence licence.

open-rr-bioinfo-best-practice's People

Contributors

laurentgatto avatar

Stargazers

Stijn Van Hoey avatar

Watchers

Laurent Gatto avatar James Cloos avatar avatar

Forkers

inambioinfo

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