A Python package for exploratory analysis of large scale genetic variation data.

• Documentation: http://scikit-allel.readthedocs.org
• Source code: https://github.com/cggh/scikit-allel
• Download: https://pypi.python.org/pypi/scikit-allel

Please note that scikit-allel is no longer under active development and is now in "maintenance-only" mode. The intended successor project is sgkit (the Statistical Genetics Toolkit) which should support all the functionality of sckit-allel, but provide better scaling, performance and maintainability. Sgkit is not yet at feature parity with scikit-allel and is therefore not ready for all applications, but we welcome contributions!