Comments (7)
@apeck12 Ah. Yes. I understand what you mean. For those geometry optimization runs, I skipped reflections to save computing time. Try "/reg/d/psdm/mfx/mfxlz0420/scratch/tmalla/indexing/v1/dark/stream_files/dark-v1.stream"
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In the case of no indexed reflections, the StreamInterface
class can still be used to plot the unit cell distributions by setting cell_only=True
during initialization.
The dark-v1.stream yields the following results:
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@fredericpoitevin, there only seem to be unindexed peaks in the Geo-104.stream file, hence why the compute_resolution
call fails. Do you think we should have the StreamInterface
class spit out a warning if it doesn't find any cells / reflections?
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oh that's weird, I thought this one had indexed peaks... I asked @73km on Slack.
But yes, in terms of behavior, I think it would help to catch this case and spit out a warning
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This had 2775 indexed peaks.
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@73km, could you point to which line numbers contain the indexed peaks? I thought indexed reflections were listed after the line "Reflections measured after indexing", but I don't see that line anywhere in the Geo-104.stream file.
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They show up after "peaks from search". For indexed peaks there will be a line, few lines above, that says "indexed_by = {something}", for non indexed it will be "indexed_by = none"
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Related Issues (20)
- `PiPCA` documentation
- PiPCA: Adding binning/downsampling option in `get_images()`
- PiPCA: timing bottlenecks
- Absolutely. There are conventions that should be consistent within the class regarding private/exposed methods and parameters, which can be added in future updates.
- Add maxevents to timetool analysis
- Centralized PV library? HOT 1
- Detector geometry: flag or update when camera length changes
- Detector geometry: refinement strategies HOT 1
- Crystal indexing: theory and implementations
- Script to generate a default yaml HOT 4
- Simple interface for the config to generate small data files
- Job summary tasks
- `run_analysis` fails if mask is not provided
- Airflow integration on s3df HOT 1
- `TypeError` when an event does not have an ebeamPhotonEnergy value HOT 1
- rename `timetool_diagnostics`
- enhance and test `ih5` everywhere
- Fix airflow for psffb after confirmation of succesful s3df integration
- `retrieve_pixel_index_map` not working for pnCCD detector HOT 1
- Change logging level as a command line argument
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