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Name: Alana Alexander
Type: User
Twitter: laninsky
Name: Alana Alexander
Type: User
Twitter: laninsky
Taking fasta alignments with ambiguity codes and turning them into a structure file
Analyses corresponding to Mindanao PAIC bats and rats diversification project
Analysis code used for various beetle UCE projects
Analyses related to RADseq study on Ceyx
Analyses and data corresponding to "Limited movement of a hybrid zone in relation to regional variation in magnitude of climate change"
Combining technical replicates/replicate samples at the structure file stage
Blasting between monolithic UCE fasta files to find out which loci are shared between different base genomes
Given a list of samples that can be used to construct the allelic ladder, this script will give a selection of samples that cover alleles found in the greater population
Do you want to chuck your SNPs through dadi, but are coming from stacks/structure? This script might help
Calculates pairwise distance between samples for a folder of fasta files
Are the combination of alleles in your population the most divergent you could get out of the alleles in the total meta-population?
Some quick R code to find out which years your birthday overlaps Easter
demonstration empirical dynamic modeling code
Uses BLAST and R scripts to find genomic position of loci based off their primer sequences and expected size
Analysis code used on various UCE frog papers
Inherited a STACKs dataset consiting of the sumstats.tsv and catalog.tags.tsv files? This will create a fasta file per locus
filtering SNPs based on LD and HWE status
Tests for significant differences in genetic diversity between populations based on DNA sequence data
Some hodge podge scripts for dealing with genome stuff
digital lab book example
Using hierfstat to get per population overall FIS values
Software and Data Carpentry instructor training course material
Assembling fasta and SNP data into a file that can be inputted into migrate
Need to figure out the average amount of missing data per sample across your UCE loci? Look no further!
A declarative, efficient, and flexible JavaScript library for building user interfaces.
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TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
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Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
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We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.