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docs's Issues

extend tutorials

  • move tutorials into separate section
  • add an additional "level 2" with famous protein examples
  • add an additional "run on your own data" model
  • add more copy for the visualisation part of the installation tutorial

remove the chmod step

ways to guide the UX could be:

  • chmod confirmation message
  • API key confirmation message

reformat table of contents

image

might look better like this:

  • labdao
    • what is labdao?
    • mission
    • get involved
    • contributing
  • openlab
    • what is openlab?
    • running a service
    • adding a service

I am personally not a fan of concatenating these atoms into large molecules within the docs (probably because we have pretty big atoms right now, cc @blahah). I would drop all molecules right now, until we have worked out a more intuitive structure.

add docs for histology image analysis

Hi @hossam-zaki - could you add a set of docs for the pathology image processing tool that you have built? In terms of the target audience - I think there is a lot of potential if we speak to a college-CS and high-school-bio community.

reorganising the docs

toplevel:

  • Welcome to LabDAO
  • LabDAO
    • Quickstart Guide
    • Mission
    • Org structure
    • LAB token
  • Contributing to LabDAO
    • skills and roles
    • Teams, Guilds, and Working Groups
    • Offering laboratory services
    • Receiving funding and rewards
    • Meetings
    • Governance
    • Contributor guidelines
  • Technology
    • lab-exchange
    • lab-standards
    • lab-NFTs
    • dry-lab applications
    • wet-lab applications
  • Community
    • Onboarding
    • Lab Meeting
    • Lab Retreats
  • Coordination
    • Tokenomics group
    • Legal
  • Ressources
    • LabDAO memo
    • LabDAO onepager
    • Reading list

how do we create capitalised directory names on the sidebar

Currently sidebar subsection names are automatically defined based on the corresponding directory names. Is there a low-overhead way to change the capitalisation of these sections?

image

For example "dna-seq" turns to "DNA-Seq" (will require some manual definition, or renaming of the directories?)

nextflow integration

tier-1 three tiers

  • nf-core just like within a DAO the central core
  • nextflow production
  • nextflow developer hello world

tier-2 lab-developer grade application

  • docker compose yaml file - map 1:1 to helm charts for kubernetes
  • main.py

tier-3 lab-minimalist grade application

  • command-line executable "main.py argument_1"
  • Dockerfile with dependencies

does your tool have a command line interface?
docker
docker compose -
nextflow workflow -
nf-core workflow -

restify-service for any API (or any python library really that does not have a ton of dependencies)

Update Community docs

Hi @lilyhg - I think it would be good if we updated the docs on community activities and ways to contribute. Right now projects have their own section, so we should probably keep the focus in this section on groups and events.

I might delete some notes before our upcoming milestone to make sure we have clean docs with up-to-date information. The old notes should still be in the commit history.

Reaction Loom for wireframes

Create a reaction Loom for preliminary wireframes.
no right/wrong way to do this, just try to speak about what is on your mind as you look at them.
What did you expect to see that's there or isn' there? Would you want an action to be in a different location? What features do you think should be highlighted more/less?
There are a number of different designs, so please mention any preferences!

enable mermaid based graphs for docs

Problem: Mermaid is a graph plotting tool in markdown that enables fast and easy generation of flowcharts of dependencies. This has value for application docs. Mermaid is not available in docusaurus.

Proposed Solution: To include mermaid to docusaurus, an actively maintained project exists: https://github.com/sjwall/mdx-mermaid

I propose we integrate mermaid support.

General review and updating the "how to contribute" section

Hi team - I think the current docs need an update to make it clear how people can engage with the organisation. I would love to hear your feedback after taking a pass through the docs on how we can improve them and where we need to make updates.

Docs minor structure update

Hey Aakaash, as discussed, minor updates:

  1. At the moment, when you click "welcome", it only drops down what's underneath, and you have to click "welcome to labdao" to read anything. Infuriating!

Can we make the text on the "Welcome to labdao" page visible directly when you click "Welcome"? So no dropdown under Welcome.

  1. Similarly, can you create a page for Affinity Binding too. Just put a bit of filler text saying "Our first toolset is for Affinity Binding", and I'll update the copy. [I'll add a short intro, with links to the subpages e.g. Introduction, Tools etc].

  2. As a temporary measure, while we only have 1 toolset and 1 tutorial, can we move the Installation tutorial back underneath Affinity Binding, and just call it "Tutorial". As soon as we have multiple tutorials, we'll rethink this.

Thanks!

After this, I'll make some minor polishing updates to copy.

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