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glosim.py traj-pentacene.xyz -n 9 -l 9 -g 0.3 -c 3 --kernel rematch --gamma 2 --periodic --nonorm

                   :
glosim.py: error: unrecognized arguments: --periodic --nonorm

WARNING! fast hungarian library is not available 

Cannot find mcpermanent.so module in pythonpath. Permanent evaluations will be very slow and approximate.
Get it from https://github.com/sandipde/MCpermanent 
          TIME:   Wed Oct 17 14:46:59 2018
        ___  __    _____  ___  ____  __  __ 
       / __)(  )  (  _  )/ __)(_  _)(  \/  )
      ( (_-. )(__  )(_)( \__ \ _)(_  )    ( 
       \___/(____)(_____)(___/(____)(_/\/\_)
                                            
                                             
using output prefix = traj-pentacene-n9-l9-c3.0-g0.3_rematch-2.0
Reading input file traj-pentacene.xyz
564  Configurations Read
Computing SOAPs
Traceback (most recent call last):   
  File "glosim/glosim.py", line 862, in <module>
    main(args.filename, nd=args.n, ld=args.l, coff=args.c, cotw=args.cotw, gs=args.g, mu=args.mu, centerweight=args.cw, onpy=args.onpy, peratom=args.peratom, unsoap = args.unsoap, usekit=args.usekit, kit=args.kit,alchemyrules=args.alchemy_rules, kmode=args.kernel, normalize_global=args.normalize_global, permanenteps=args.permanenteps, reggamma=args.gamma, noatom=noatom, nocenter=nocenter, envsim=args.envsim, nprocs=args.np, verbose=args.verbose, envij=envij, prefix=args.prefix, nlandmark=args.nlandmarks, printsim=args.distance,ref_xyz=args.refxyz,partialsim=args.livek,lowmem=args.lowmem,restartflag=args.restart, zeta=args.zeta, xspecies=args.separate_species, alrange=(args.first,args.last), refrange=(args.reffirst, args.reflast))
  File "glosim/glosim.py", line 243, in main
    sii,senvii = structk(si, si, alchem, peratom, mode=kmode, fout=fii, peps=permanenteps, gamma=reggamma, zeta=zeta, xspecies=xspecies)        
  File "/home/iino/Work/glosim/libmatch/structures.py", line 292, in structk
    cost=rematch(kk, gamma, 1e-6)  # hard-coded residual error for regularized gamma
  File "/home/iino/Work/glosim/libmatch/lap/perm.py", line 46, in rematch
    raise ValueError("No Python equivalent to rematch function...")
ValueError: No Python equivalent to rematch function...

python glosim.py qm7.xyz -n 9 -l 9 -g 0.3 -c 3 --zeta 2 --peratom --kernel average

from sklearn.model_selection import ShuffleSplit
rs = ShuffleSplit(n_splits=10, test_size=.20, random_state=0) # 10 times independently running
train_index, test_index in rs.split(X):
    X_train, y_train = X[train_index][:, train_index], y[train_index]
    X_test, y_test = X[test_index][:, train_index], y[test_index]

python2 glosim.py example/mol-50.xyz
WARNING! fast hungarian library is not available 

Cannot find mcpermanent.so module in pythonpath. Permanent evaluations will be very slow and approximate.
Get it from https://github.com/sandipde/MCpermanent 
          TIME:   Wed Dec 21 17:34:03 2016
        ___  __    _____  ___  ____  __  __ 
       / __)(  )  (  _  )/ __)(_  _)(  \/  )
      ( (_-. )(__  )(_)( \__ \ _)(_  )    ( 
       \___/(____)(_____)(___/(____)(_/\/\_)
                                            
                                             
Reading input file example/mol-50.xyz
50  Configurations Read
Computing SOAPs
Traceback (most recent call last):   
  File "glosim.py", line 871, in <module>
    main(args.filename, nd=args.n, ld=args.l, coff=args.c, cotw=args.cotw, gs=args.g, mu=args.mu, centerweight=args.cw, periodic=args.periodic, usekit=args.usekit, kit=args.kit,alchemyrules=args.alchemy_rules, kmode=args.kernel, nonorm=args.nonorm, permanenteps=args.permanenteps, reggamma=args.gamma, noatom=noatom, nocenter=nocenter, envsim=args.envsim, nprocs=args.np, verbose=args.verbose, envij=envij, prefix=args.prefix, nlandmark=args.nlandmarks, printsim=args.distance,ref_xyz=args.refxyz,partialsim=args.livek,lowmem=args.lowmem,restartflag=args.restart, zeta=args.zeta, xspecies=args.separate_species, alrange=(args.first,args.last), refrange=(args.reffirst, args.reflast))
  File "glosim.py", line 189, in main
    si.parse(at, coff, cotw, nd, ld, gs, centerweight, nocenter, noatom, kit = kit)       
  File "/home/peter/kodesjov/glosim/libmatch/structures.py", line 82, in parse
    desc = quippy.descriptors.Descriptor("soap central_weight="+str(cw)+"  covariance_sigma0=0.0 atom_sigma="+str(gs)+" cutoff="+str(coff)+" cutoff_transition_width="+str(cotw)+" n_max="+str(nmax)+" l_max="+str(lmax)+' '+lspecies+' Z='+str(sp) )   
AttributeError: 'module' object has no attribute 'descriptors'