Comments (3)
Hi @YZ-SJTU,
It's hard for me to say anything specific about your particular dataset, but I would guess that this is not a problem. At any given timepoint, there can be many different types of cells and some may be more developed than others (either because they started differentiating earlier or because they developed quicker). A connection between clusters largely made of cells from the same timepoint doesn't indicate that those cells transitioned instantaneously, but rather that we observed both cell types at that timepoint.
Hope this helps!
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I think it's impossible for me to answer that. For any type of analysis, it's hard to say whether it has real-world meaning. It depends a lot on how carefully the data was collected and the analysis was performed. Even then, there might just not be any signal to be found.
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