GWAS_FM
This repository contains scripts for QC and genome-wide analysis study (GWAS) using:
Data : UK Biobank
Method : SAIGE, Scalable and Accurate Implementation of Generalized mixed model (Chen, H. et al. 2016)
Phenotype : fibromyalgia syndrome
Covariates : age, sex, genotyping platform, first 40 PCs
Platform : x86_64 GNU/Linux beluga1.int.ets1.calculquebec.ca (computecanada)
Saige script source: https://github.com/weizhouUMICH/SAIGE