This is a repository connected to Arven etter Nansen - Workshop 2020
The workshop will take place at the Department of Biosciences in Kristine Bonnevies Hus, Blindernveien 31. You can take the T-bane to Blindern station or the tram to John Collets plass station and walk from there. Take the elevator or stairs to 4th floor and we will meet in room 4436.
We will start at 10:00. Please be there in time or inform us if you will be later.
We will together prepare the lunch in the AQUA section lunch room or a meeting room. And it will be served fruits and coffee/the during brakes.
Pleas make sure that you have installed all necessary software and packages before Monday. In preparation for the workshop we ask you to make sure that you have the latest version of R (https://cran.r-project.org/) and Rstudio (https://rstudio.com/products/rstudio/) installed. The workshop requires some knowledge about how to use R. If you are entirely new to R you should complete one of the many introduction courses or exercises which can be found online. For instance the Introduction course by Datacamp:ย https://www.datacamp.com/courses/free-introduction-to-r
When you have installed R and Rstudio, run the script called required_packages.R
Day | Time | ||
---|---|---|---|
Monday | 10:00 - 10:30 | Welcome and short introduction | Bente, Anna |
10:30 - 12:30 | Introduction to metabarcoding | Alex | |
12:30 - 13:30 | Lunch | ||
13:30 - 14:30 | Datageneration | Alex | |
14:30 - 16:00 | Introduction to R and Rstudio | Anders | |
16:00 - 18:00 | Help with setup, preaparion of data | Anders/Alex | |
Tuesday | 09:00 - 10:00 | Clustering and DADA2 | Alex |
OBS Room 4613 | 10:00 - 12:00 | DADA2 pipeline | Anders |
12:00 - 13:00 | Lunch | ||
13:00 - 16:00 | DADA2 continued | Anders | |
16:00 - 17:00 | Q and A, tips and hints | Anders | |
Wednesday | 09:00 - 12:00 | Intro to Phyloseq and Microbiome packages | Anders |
OBS Room 4619 | 12:00 - 13:00 | Lunch | |
13:00 - 17:00 | Statistical analyses | Alex | |
Thursday | 09:00 - 11:00 | Ggplot2 | Alex |
11:00 - 12:00 | Phylogeny, EPA and pplacer | Anders | |
12:00 - 13:00 | Lunch | ||
13:00 - 14:00 | Phylogeny continued | Anders | |
14:00 - 15:30 | Networks | Anders | |
15:30 - 16:00 | Questions and evaluations | Bente |