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weinbergerlab gtonkinhill thomasmulvaney sap-phe-bioinformatics marianaflorest

serocall's Issues

missing build file

Hi,

I'm trying to build a database but the file genomeOnly/T4J_genomeOnly_R1_001.fastq.gz doesn't appear to be available. Is there somewhere I could download it from?

Thanks

SyntaxError in serocall.py

Error in the program in Python-3.7.5. environment only:

(base) [user@serv SeroCall]$ python serocall -o strp1 -t 144 ../seroba_work/Strp1_R1.fastq.gz ../seroba_work/Strp1_R2.fastq.gz
Performing alignments...
  -> 1000000
  -> 2000000
  -> 3000000
Calling serotypes...
  File "/export/home/vkorchagin/SeroCall/serocall.py", line 308
    print tu
           ^
SyntaxError: Missing parentheses in call to 'print'. Did you mean print(tu)?

Timeline for pip ?

Installation through GitHub releases, pip, bioconda and Docker are forthcoming.

Are you able to provide a rough ETA ?
(for pip)

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