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bdc

Check out the vignettes with detailed documentation on each module of the bdc package

biodiverse

A tool for the spatial analysis of diversity

bogarin_anchored_phylogenomics

Some single purpose scripts to analyse dataset of Bogarin et al. 2018 (in prep)

bromeliad

Distribution data for >3,200 Bromeliaceae species

cd

Collection Descriptions

coordinatecleaner

Automated flagging of common spatial and temporal errors in biological and palaeontological collection data, for the use in conservation, ecology and palaeontology.

iucnn

Train neural networks based on geographic species occurrences, environmental data and existing IUCN Red List assessments to predict the conservation status of "Not Evaluated" or "Data Deficient" species, for any taxon or geographic region of interest.

landgencourse

landscape_genetics_r_course

Swirl course on landscape genetic data analysis with R

meetup-creacion_mapas

Elaboración de mapas con distintas packages.

modler

An ecological niche model workflow based on dismo

phylonetworks.jl

A Julia package for statistical inference, data manipulation and visualization of phylogenetic networks

plantr

An R Package for Managing Species Records from Biological Collections

ploidyngs

Explore ploidy levels from NGS data alone

raxmlgui

A new graphical interface for RAxML

rootbbb

Root age estimation using a Bayesian Brownian bridge model

sampbias

Sampbias is a method and tool to 1) visualize the distribution of occurrence records and species in any user-provided dataset, 2) quantify the biasing effect of geographic features related to human accessibility, such as proximity to cities, rivers or roads, and 3) create publication-level graphs of these biasing effects in space.

supersmartr-workshop-mini

Mini workshop introducing the supersmartR packages and pipeline

wbds_la_camp