kensho-technologies / sequence_align Goto Github PK
View Code? Open in Web Editor NEWEfficient implementations of Needleman-Wunsch and other sequence alignment algorithms written in Rust with Python bindings via PyO3.
License: Apache License 2.0
Efficient implementations of Needleman-Wunsch and other sequence alignment algorithms written in Rust with Python bindings via PyO3.
License: Apache License 2.0
Currently, testing is really just integration testing, where we call the Python code and verify the outputs are correct. We should add some tests on the Rust code directly (e.g., verifying alignment matrices are correct), as well as code coverage.
The codecov package just got removed from pypi, it needs to be removed from the dev dependencies and if we still want to use it, replace it with the new supported version: see here
Need to make sure changes don't unintentionally (or intentionally...?) slow down the code and/or increase memory usage.
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