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Running ./install fails - existing files

When running, I get a number of issues because I already have existing vim/gitconfig/zsh config files.
Can you think of a way to just append to these files, or somehow use both my current settings and the new ones?

Creating link ~/.dotfiles -> /Users/matt.warren/dotfiles/
~/.gitconfig already exists but is a regular file or directory
~/.config already exists but is a regular file or directory
Creating link ~/.zsh -> /Users/matt.warren/dotfiles/zsh/
Linking failed ~/.zprezto/modules/prompt/functions/prompt_kaye_setup -> /Users/matt.warren/dotfiles/zsh/prompt_kaye_setup
~/.vim already exists but is a regular file or directory
Creating link ~/.tmux.conf -> /Users/matt.warren/dotfiles/tmux.conf
~/.vimrc already exists but is a regular file or directory
Creating link ~/.tmux -> /Users/matt.warren/dotfiles/tmux/
~/.zshrc already exists but is a regular file or directory
Creating link ~/.zpreztorc -> /Users/matt.warren/dotfiles/zpreztorc
Linking failed ~/.vim/bundle/lightline.vim/autoload/lightline/colorscheme/base16_eighties.vim -> /Users/matt.warren/dotfiles/vim/lightline/base16_eighties.vim
Creating link ~/.gitignore -> /Users/matt.warren/dotfiles/gitignore
Creating link ~/.agignore -> /Users/matt.warren/dotfiles/agignore
Nonexistent target for ~/.vim/autoload/plug.vim : /Users/matt.warren/dotfiles/vim/autoload/vim-plug/plug.vim
Creating link ~/.zprezto -> /Users/matt.warren/dotfiles/zprezto
Some links were not successfully set up
Installing/updating submodules [git submodule update --init --recursive --remote]
Command [git submodule update --init --recursive --remote] failed

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