Comments (2)
Hi @linsson,
I recommend duplicate marking - this is standard procedure for most pipelines. Just tagging duplicates is enough - dysgu will ignore reads flagged as duplicate.
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Thanks a lot @kcleal !
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Related Issues (20)
- input vcf cannot be read HOT 2
- running docker container fails HOT 2
- changing default argument when high read depth HOT 5
- Merging SV from Oxford Nanopore - expected runtime HOT 3
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- SV calling NOT working HOT 2
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- Hi,
- Merging genotype files HOT 7
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- RAM Issue - merging large cohorts HOT 13
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