kathyxchen / pathcore-t-demo Goto Github PK

The following question has been posed: how can we make it more obvious what the relationship is between the most and least expressed values? e.g. how much more expressed are these "most expressed" samples compared to the "least expressed"? It's difficult to tell because they are separated at the moment.

Even if we keep them separate, is there a way to make it easier to understand how the two relate to each other? e.g. using a common color?

For now, we are building the Sphinx documentation locally and adding the output as a static set of files in this application.

This is because we ran into some formatting issues when building the documentation that would
take a bit longer to address in the PathCORE repository than would fit in our current timeline. (e.g. right now, I am changing the docstring format for some methods in order to improve the readability in the Sphinx documentation, but those changes make it so that those methods are no longer flake8-compliant).

We would like to offer more information about the demo repository. The code will be cleaned up and the README updated so that users have a better understanding of what we did to create the P. aeruginosa PathCORE demo server and can more easily get started on a demo server of their own.

This is a change to the network visualization (D3.js) page. Pathways highlighted upon search may be made more distinguishable by decreasing the opacity of other pathways (that are not the pathways searched for nor the neighbors of the pathways searched).