Dependency issues in module update after 1.8.0 about open-cravat HOT 6 CLOSED

@iceback New issue here for the dependency thing.

Could you send me the output of oc module ls -i. It'll probably be a quite a few lines. I'm going to recreate your installed modules and versions to see what's causing dependency issues.

from open-cravat.

Sure, give me a second

moduleListing.txt

from open-cravat.

Trouble today:
2020/04/28 12:07:31 cravat Input format could not be determined for file Batch1and3-joint.raw.SGS_regions.filteredInd.vcf.gz. Additional input format converters are available. View available converters in the store or with "oc module ls -a -t converter"

ocDriver module ls -a -t converter
Name Title Type Installed Up to date Store latest ver Store data source ver Local ver Local data source ver Size
23andme-converter 23andMe Converter converter 1.3.1 15.7 kB
ancestrydna-converter AncestryDNA Converter converter 1.3.1 27.4 kB
cravat-converter Cravat Converter converter yes 1.1.2 None 9.2 kB
dbsnp-converter dbSNP Converter converter 1.1.1 153 28.7 GB
ftdna-converter FamilyTreeDNA Converter converter 1.3.1 28.4 kB
oldcravat-converter OldCravat Converter converter yes 1.1.2 None 7.6 kB
vcf-converter VCF Converter converter yes 1.4.2 None 48.9 kB

from open-cravat.

It looks like a few modules only partially installed. One of them was vcf-converter, which is why the vcf file was not processed properly. The one's that partial installed have None as a version in moduleListing.txt. To fix it in your installation, run oc module uninstall XXXXX && oc module install XXXXX for the None version modules.

I expect this was caused when you cancelled the update. Normally, this would delete the module that was mid-install, but it seems like there was some corner case here that prevented it. We'll try to track it down and make the partial handling more robust next version.

from open-cravat.

from open-cravat.

Yes! uninstalled, installed and things look good. Waiting for confirmation from the real user, but thanks for your help.

from open-cravat.