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| ##       |____  ##| ## /##__  ##| ##__  ##      |  ######    
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bloodtest's Issues

Error in `ruby': free(): invalid next size (normal): 0x00005629fd5e37c0 

======= Backtrace: =========
/lib/x86_64-linux-gnu/libc.so.6(+0x70bfb)[0x7fb6d11b2bfb]
/lib/x86_64-linux-gnu/libc.so.6(+0x76fc6)[0x7fb6d11b8fc6]
/lib/x86_64-linux-gnu/libc.so.6(+0x7780e)[0x7fb6d11b980e]
./libsimulate.so(simulate+0x177)[0x7fb6d02ecaf6]
/usr/lib/x86_64-linux-gnu/libffi.so.6(ffi_call_unix64+0x4c)[0x7fb6d0726038]
/usr/lib/x86_64-linux-gnu/libffi.so.6(ffi_call+0x32a)[0x7fb6d0725a9a]
/usr/lib/x86_64-linux-gnu/ruby/2.3.0/fiddle.so(+0x4888)[0x7fb6d092d888]
/usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3(+0x19fab1)[0x7fb6d2260ab1]
/usr/lib/x86_64-linux-gnu/ruby/2.3.0/fiddle.so(+0x469d)[0x7fb6d092d69d]
/usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3(+0x180fa5)[0x7fb6d2241fa5]
/usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3(+0x184da8)[0x7fb6d2245da8]
/usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3(+0x189fcf)[0x7fb6d224afcf]
/usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3(rb_yield+0x374)[0x7fb6d2251c34]
/usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3(+0xec974)[0x7fb6d21ad974]
/usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3(+0x180fa5)[0x7fb6d2241fa5]
/usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3(+0x184cdc)[0x7fb6d2245cdc]
/usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3(+0x189fcf)[0x7fb6d224afcf]
/usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3(rb_yield+0x374)[0x7fb6d2251c34]
/usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3(+0xec974)[0x7fb6d21ad974]
/usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3(+0x180fa5)[0x7fb6d2241fa5]
/usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3(+0x18f38f)[0x7fb6d225038f]
/usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3(+0x190413)[0x7fb6d2251413]
/usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3(+0x184cdc)[0x7fb6d2245cdc]
/usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3(+0x189fcf)[0x7fb6d224afcf]
/usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3(+0x7102d)[0x7fb6d213202d]
/usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3(ruby_exec_node+0x1d)[0x7fb6d21339cd]
/usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3(ruby_run_node+0x1e)[0x7fb6d2135ace]
ruby(+0x91b)[0x5629fb81291b]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xf1)[0x7fb6d11622e1]
ruby(_start+0x2a)[0x5629fb81294a]
======= Memory map: ========
5629fb812000-5629fb813000 r-xp 00000000 08:12 789529                     /usr/bin/ruby2.3
5629fba12000-5629fba13000 r--p 00000000 08:12 789529                     /usr/bin/ruby2.3
5629fba13000-5629fba14000 rw-p 00001000 08:12 789529                     /usr/bin/ruby2.3
5629fd163000-5629fd602000 rw-p 00000000 00:00 0                          [heap]
7fb6cc000000-7fb6cc021000 rw-p 00000000 00:00 0 
7fb6cc021000-7fb6d0000000 ---p 00000000 00:00 0 
7fb6d00d5000-7fb6d00eb000 r-xp 00000000 08:12 3043839                    /lib/x86_64-linux-gnu/libgcc_s.so.1
7fb6d00eb000-7fb6d02ea000 ---p 00016000 08:12 3043839                    /lib/x86_64-linux-gnu/libgcc_s.so.1
7fb6d02ea000-7fb6d02eb000 r--p 00015000 08:12 3043839                    /lib/x86_64-linux-gnu/libgcc_s.so.1
7fb6d02eb000-7fb6d02ec000 rw-p 00016000 08:12 3043839                    /lib/x86_64-linux-gnu/libgcc_s.so.1
7fb6d02ec000-7fb6d02ed000 r-xp 00000000 08:13 1059186                    /home/caleb/documents/programming/src/bloodtest/libsimulate.so
7fb6d02ed000-7fb6d04ec000 ---p 00001000 08:13 1059186                    /home/caleb/documents/programming/src/bloodtest/libsimulate.so
7fb6d04ec000-7fb6d04ed000 r--p 00000000 08:13 1059186                    /home/caleb/documents/programming/src/bloodtest/libsimulate.so
7fb6d04ed000-7fb6d04ee000 rw-p 00001000 08:13 1059186                    /home/caleb/documents/programming/src/bloodtest/libsimulate.so
7fb6d04ee000-7fb6d051c000 r-xp 00000000 08:12 1059121                    /usr/lib/x86_64-linux-gnu/ruby/2.3.0/date_core.so
7fb6d051c000-7fb6d071c000 ---p 0002e000 08:12 1059121                    /usr/lib/x86_64-linux-gnu/ruby/2.3.0/date_core.so
7fb6d071c000-7fb6d071e000 r--p 0002e000 08:12 1059121                    /usr/lib/x86_64-linux-gnu/ruby/2.3.0/date_core.so
7fb6d071e000-7fb6d071f000 rw-p 00030000 08:12 1059121                    /usr/lib/x86_64-linux-gnu/ruby/2.3.0/date_core.so
7fb6d071f000-7fb6d0720000 rw-p 00000000 00:00 0 
7fb6d0720000-7fb6d0727000 r-xp 00000000 08:12 1055970                    /usr/lib/x86_64-linux-gnu/libffi.so.6.0.4
7fb6d0727000-7fb6d0927000 ---p 00007000 08:12 1055970                    /usr/lib/x86_64-linux-gnu/libffi.so.6.0.4
7fb6d0927000-7fb6d0928000 r--p 00007000 08:12 1055970                    /usr/lib/x86_64-linux-gnu/libffi.so.6.0.4
7fb6d0928000-7fb6d0929000 rw-p 00008000 08:12 1055970                    /usr/lib/x86_64-linux-gnu/libffi.so.6.0.4
7fb6d0929000-7fb6d0931000 r-xp 00000000 08:12 1060454                    /usr/lib/x86_64-linux-gnu/ruby/2.3.0/fiddle.so
7fb6d0931000-7fb6d0b31000 ---p 00008000 08:12 1060454                    /usr/lib/x86_64-linux-gnu/ruby/2.3.0/fiddle.so
7fb6d0b31000-7fb6d0b32000 r--p 00008000 08:12 1060454                    /usr/lib/x86_64-linux-gnu/ruby/2.3.0/fiddle.so
7fb6d0b32000-7fb6d0b33000 rw-p 00009000 08:12 1060454                    /usr/lib/x86_64-linux-gnu/ruby/2.3.0/fiddle.so
7fb6d0b33000-7fb6d0b3a000 r-xp 00000000 08:12 1060476                    /usr/lib/x86_64-linux-gnu/ruby/2.3.0/stringio.so
7fb6d0b3a000-7fb6d0d39000 ---p 00007000 08:12 1060476                    /usr/lib/x86_64-linux-gnu/ruby/2.3.0/stringio.so
7fb6d0d39000-7fb6d0d3a000 r--p 00006000 08:12 1060476                    /usr/lib/x86_64-linux-gnu/ruby/2.3.0/stringio.so
7fb6d0d3a000-7fb6d0d3b000 rw-p 00007000 08:12 1060476                    /usr/lib/x86_64-linux-gnu/ruby/2.3.0/stringio.so
7fb6d0d3b000-7fb6d0d3d000 r-xp 00000000 08:12 1060440                    /usr/lib/x86_64-linux-gnu/ruby/2.3.0/enc/trans/transdb.so
7fb6d0d3d000-7fb6d0f3d000 ---p 00002000 08:12 1060440                    /usr/lib/x86_64-linux-gnu/ruby/2.3.0/enc/trans/transdb.so
7fb6d0f3d000-7fb6d0f3e000 r--p 00002000 08:12 1060440                    /usr/lib/x86_64-linux-gnu/ruby/2.3.0/enc/trans/transdb.so
7fb6d0f3e000-7fb6d0f3f000 rw-p 00003000 08:12 1060440                    /usr/lib/x86_64-linux-gnu/ruby/2.3.0/enc/trans/transdb.so
7fb6d0f3f000-7fb6d0f41000 r-xp 00000000 08:12 1059132                    /usr/lib/x86_64-linux-gnu/ruby/2.3.0/enc/encdb.so
7fb6d0f41000-7fb6d1140000 ---p 00002000 08:12 1059132                    /usr/lib/x86_64-linux-gnu/ruby/2.3.0/enc/encdb.so
7fb6d1140000-7fb6d1141000 r--p 00001000 08:12 1059132                    /usr/lib/x86_64-linux-gnu/ruby/2.3.0/enc/encdb.so
7fb6d1141000-7fb6d1142000 rw-p 00002000 08:12 1059132                    /usr/lib/x86_64-linux-gnu/ruby/2.3.0/enc/encdb.so
7fb6d1142000-7fb6d12d7000 r-xp 00000000 08:12 3043844                    /lib/x86_64-linux-gnu/libc-2.24.so
7fb6d12d7000-7fb6d14d7000 ---p 00195000 08:12 3043844                    /lib/x86_64-linux-gnu/libc-2.24.so
7fb6d14d7000-7fb6d14db000 r--p 00195000 08:12 3043844                    /lib/x86_64-linux-gnu/libc-2.24.so
7fb6d14db000-7fb6d14dd000 rw-p 00199000 08:12 3043844                    /lib/x86_64-linux-gnu/libc-2.24.so
7fb6d14dd000-7fb6d14e1000 rw-p 00000000 00:00 0 
7fb6d14e1000-7fb6d15e4000 r-xp 00000000 08:12 3043848                    /lib/x86_64-linux-gnu/libm-2.24.so
7fb6d15e4000-7fb6d17e3000 ---p 00103000 08:12 3043848                    /lib/x86_64-linux-gnu/libm-2.24.so
7fb6d17e3000-7fb6d17e4000 r--p 00102000 08:12 3043848                    /lib/x86_64-linux-gnu/libm-2.24.so
7fb6d17e4000-7fb6d17e5000 rw-p 00103000 08:12 3043848                    /lib/x86_64-linux-gnu/libm-2.24.so
7fb6d17e5000-7fb6d17ed000 r-xp 00000000 08:12 3043846                    /lib/x86_64-linux-gnu/libcrypt-2.24.so
7fb6d17ed000-7fb6d19ed000 ---p 00008000 08:12 3043846                    /lib/x86_64-linux-gnu/libcrypt-2.24.so
7fb6d19ed000-7fb6d19ee000 r--p 00008000 08:12 3043846                    /lib/x86_64-linux-gnu/libcrypt-2.24.so
7fb6d19ee000-7fb6d19ef000 rw-p 00009000 08:12 3043846                    /lib/x86_64-linux-gnu/libcrypt-2.24.so
7fb6d19ef000-7fb6d1a1d000 rw-p 00000000 00:00 0 
7fb6d1a1d000-7fb6d1a20000 r-xp 00000000 08:12 3043847                    /lib/x86_64-linux-gnu/libdl-2.24.so
7fb6d1a20000-7fb6d1c1f000 ---p 00003000 08:12 3043847                    /lib/x86_64-linux-gnu/libdl-2.24.so
7fb6d1c1f000-7fb6d1c20000 r--p 00002000 08:12 3043847                    /lib/x86_64-linux-gnu/libdl-2.24.so
7fb6d1c20000-7fb6d1c21000 rw-p 00003000 08:12 3043847                    /lib/x86_64-linux-gnu/libdl-2.24.so
7fb6d1c21000-7fb6d1ca2000 r-xp 00000000 08:12 1056150                    /usr/lib/x86_64-linux-gnu/libgmp.so.10.3.2
7fb6d1ca2000-7fb6d1ea2000 ---p 00081000 08:12 1056150                    /usr/lib/x86_64-linux-gnu/libgmp.so.10.3.2
7fb6d1ea2000-7fb6d1ea3000 r--p 00081000 08:12 1056150                    /usr/lib/x86_64-linux-gnu/libgmp.so.10.3.2
7fb6d1ea3000-7fb6d1ea4000 rw-p 00082000 08:12 1056150                    /usr/lib/x86_64-linux-gnu/libgmp.so.10.3.2
7fb6d1ea4000-7fb6d1ebc000 r-xp 00000000 08:12 3043859                    /lib/x86_64-linux-gnu/libpthread-2.24.so
7fb6d1ebc000-7fb6d20bb000 ---p 00018000 08:12 3043859                    /lib/x86_64-linux-gnu/libpthread-2.24.so
7fb6d20bb000-7fb6d20bc000 r--p 00017000 08:12 3043859                    /lib/x86_64-linux-gnu/libpthread-2.24.so
7fb6d20bc000-7fb6d20bd000 rw-p 00018000 08:12 3043859                    /lib/x86_64-linux-gnu/libpthread-2.24.so
7fb6d20bd000-7fb6d20c1000 rw-p 00000000 00:00 0 
7fb6d20c1000-7fb6d2332000 r-xp 00000000 08:12 1058923                    /usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3.0
7fb6d2332000-7fb6d2532000 ---p 00271000 08:12 1058923                    /usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3.0
7fb6d2532000-7fb6d253a000 r--p 00271000 08:12 1058923                    /usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3.0
7fb6d253a000-7fb6d253b000 rw-p 00279000 08:12 1058923                    /usr/lib/x86_64-linux-gnu/libruby-2.3.so.2.3.0
7fb6d253b000-7fb6d254b000 rw-p 00000000 00:00 0 
7fb6d254b000-7fb6d256e000 r-xp 00000000 08:12 3043840                    /lib/x86_64-linux-gnu/ld-2.24.so
7fb6d25e0000-7fb6d26e1000 rw-p 00000000 00:00 0 
7fb6d26e1000-7fb6d2732000 r--p 00000000 08:12 1312850                    /usr/lib/locale/aa_DJ.utf8/LC_CTYPE
7fb6d2732000-7fb6d2736000 rw-p 00000000 00:00 0 
7fb6d275f000-7fb6d2760000 rw-p 00000000 00:00 0 
7fb6d2760000-7fb6d2761000 ---p 00000000 00:00 0 
7fb6d2761000-7fb6d2764000 rw-p 00000000 00:00 0 
7fb6d2764000-7fb6d276b000 r--s 00000000 08:12 1059829                    /usr/lib/x86_64-linux-gnu/gconv/gconv-modules.cache
7fb6d276b000-7fb6d276e000 rw-p 00000000 00:00 0 
7fb6d276e000-7fb6d276f000 r--p 00023000 08:12 3043840                    /lib/x86_64-linux-gnu/ld-2.24.so
7fb6d276f000-7fb6d2770000 rw-p 00024000 08:12 3043840                    /lib/x86_64-linux-gnu/ld-2.24.so
7fb6d2770000-7fb6d2771000 rw-p 00000000 00:00 0 
7fffa88f6000-7fffa90f5000 rw-p 00000000 00:00 0                          [stack]
7fffa9141000-7fffa9143000 r--p 00000000 00:00 0                          [vvar]
7fffa9143000-7fffa9145000 r-xp 00000000 00:00 0                          [vdso]
ffffffffff600000-ffffffffff601000 r-xp 00000000 00:00 0                  [vsyscall]

Command Line Args

The R script needs to warn you if you run it without a CSV file, and the Ruby script should probably take config params as user input.

Reduce Progress Output Frequency

We write to stdout every single simulation... maybe we should only do it every 1% of the sims? That might speed us up some, though it might be negligible.

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