kamondemwangi Goto Github PK

introduction-to-linux

brief intro to linux

introductorylinux

Introduction to Linux for the Eastern Africa Network of Bioinformatics Training (EANBiT) Training Course, 2018.

introductorylinux-2019

introductorymarkdown

Introduction the basic markdown syntax training materials for Open Science Workshop, Nairobi.

kamonde-academic

labs

Rmd source files for the HarvardX series PH525x

learning-bioinformatics-at-home

resources for learning bioinformatics

learning-python

level1master

machine_learning_for_good

Machine learning fundamentals lesson in interactive notebooks

marvel

MARVEL: Metagenomic Analyses and Retrieval of Viral ELements

mini-projects

Mini-projects for the residential training

myfirstfork

Fork this repository and make changes to the README

opensciencekehackathon

Planning for the OpenScienceKE Hackathon to be held, tentatively, on 30th and 31st August.

phylogenetic-tree-study

Estimating Phylogenetic trees using six microorganisms 16S rRNA gene with Unsupervised Learning, web based tools and Molecular Evolutionary Genetics Analysis MEGA7

pmids

pub med ids for analysis

pydatawarsaw-notebooks

python4bioinformatics

Lecture resources for Python for Bioinformatics EANBiT course.

python4bioinformatics2019

Updated materials for MSc Bioinformatics for Pwani University

reproducibleresearch

Additional Training materials for workflows and package management

reproducibleresearchrstudio

This is a basic introductory course material prepared for the Open Science Workshop, Nairobi.

r_for_biologists

Scripts and data for Plotting in R for Biologists, a video course on YouTube

starter-academic

teachingjupyternotebooks

Training materials for the Open Science Workshop held in Nariobi

thinkbayes

Code repository for Think Bayes.

thinkbayes2

Text and code for the second edition of Think Bayes, by Allen Downey.

trimmomatic

Read trimming tool for Illumina NGS data.

unix-cmdline-exercises

workflows_and_package_management

Reproducibility and package management : workflow languages (CWL, Snakemake, Conda).