Git Product home page Git Product logo

software-building-instructions's People

Contributors

jvermaas avatar

Stargazers

 avatar  avatar  avatar  avatar  avatar  avatar  avatar  avatar

Watchers

 avatar  avatar  avatar

software-building-instructions's Issues

sfftw.h error while installing namd3.0

Hello,
Iam working on an HPC enviroment and iam trying to install namd3.0 based on the documentation in the link below:
https://github.com/jvermaas/Software-Building-Instructions/blob/main/NAMD.md
based on the procedure in NAMD on slurm-based clusters part

The modules loaded on my enviroment below:
$ module load CUDA
$ module load OpenMPI
$ module load Tcl/8.6.10-GCCcore-9.3.0
$ module load FFTW/3.3.8-intel-2020a
$ module load FFTW/3.3.8-gompi-2019a

While trying to install namd3.0 after executing "make -j8" command i got the errors below:

src/ComputePme.C:19:10: fatal error: sfftw.h: No such file or directory
19 | #include <sfftw.h>
| ^~~~~~~~~
compilation terminated.
make: *** [obj/ComputePme.o] Error 1
make: *** Waiting for unfinished jobs....
src/Node.C: In constructor ‘Node::Node(GroupInitMsg*)’:
src/Node.C:351:28: error: ‘ck_get_GNI_BIConfig’ was not declared in this scope
351 | balancedInjectionLevel=ck_get_GNI_BIConfig();
| ^~~~~~~~~~~~~~~~~~~
src/Node.C:353:5: error: ‘ck_set_GNI_BIConfig’ was not declared in this scope
353 | ck_set_GNI_BIConfig(20);
| ^~~~~~~~~~~~~~~~~~~
src/Node.C: In member function ‘void Node::startup()’:
src/Node.C:886:7: error: ‘ck_set_GNI_BIConfig’ was not declared in this scope
886 | ck_set_GNI_BIConfig(balancedInjectionLevel);
| ^~~~~~~~~~~~~~~~~~~
make: *** [obj/Node.o] Error 1

If there is something missing in my procedure please let me know.

Thanks in advance.

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.