jshleap Goto Github PK

a2g

Amplicons to Global Gene

advantage

Better words for better ads

advantage-example

Run of ADvantange in paperpile's blog as landing page

alphafold

Open source code for AlphaFold.

biogeography

Scripts for Biogeography

burstmybubble

Insight project to rate the political bias in a news you are reading

collaboration

Some code I've developed in collaboration with other people, as in I am not the main developer. Mainly Christian Blouin and Alex Safatli

cotagging_playground

Space to keep the code being developed for cotagging in diverse populations

cristesculab_misc

data

Repo to share data

gatk4-power

Supporting GATK4 on IBM Power architecture, including enablement, performance tuning and optimization.

imageapp

Simple app to explore images collected from pooled screens

jshleap.github.io

Personal web page of Jose Sergio Hleap using minimal-mistakes template

justblast

moduler

In this project you will find the tools to do shape modularity with a graph theory approach. It can also be extended to any correlation-based network.

ngstools

Programs to analyse NGS data for population genetics purposes

phylogenetics

Python scripts for phylogenetics. This is mainly work on creation of trees and super trees, and some utilities related with them. Phylogenetic building need appropriate software, so this is not intended for tree buiding, but more to glue techniques

predictprotein-docker

Based off of the official Rostlab & PredictProtein website installation, as of 2020-09-07, the produced Docker image from this repository will result in a fully functioning predictprotein suite, including all of its required methods. Databases are not included.

pyrs

A python script to compute polygenic risk scores

sharcnet

stacks_tools

Repo with tools to optimize and run STACKS

structbio

Scripts for structural biology. This includes modularity testing, svm classification for structures, feature selection, among others.

subset_my_blast

This simple script will generate a BLAST database alias of a subset of sequences based on a taxon tree

ta_pipes

Scripts and pipelines for the manuscript "Assessment of current taxonomic assignment strategies for metabarcoding eukaryotes: Insights from mock communities"

tutorials