Make some plots of trajectories in phase space about drosophila-dynamics HOT 5 CLOSED

A-D as in #7 (in fact, those are the very same simulation runs).
Black circles are stable equilibria, white circles are instable equlibria and vertical lines are min/max values of the limit cycle (values for these points taken from the bifurcation diagram).

from drosophila-dynamics.

Again, the fact that you have another stable equilibrium (before/after
switching on/off the bias, not shown as a black dot) deserves explanation.

On 11 November 2015 at 23:05, Johannes Rieke [email protected]
wrote:

[image: phase_space]
https://cloud.githubusercontent.com/assets/5103165/11105660/a5ac13aa-88d0-11e5-9d17-54d459a517c5.png

A-D as in #7 #7 (in
fact, those are the very same simulation runs).
Black circles are stable equilibria, white circles are instable equlibria
and vertical lines are min/max values of the limit cycle (values for these
points taken from the bifurcation diagram).

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#10 (comment)
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from drosophila-dynamics.

Included a red dot for the rest state and will explain this in the text.
Also, I thought about making a closeup of the lower left region of B (as an extra figure), and put in some arrows that show how the short current pulses push the trajectory from the equilibrium across the separatrix towards the limit cycle and back.

from drosophila-dynamics.

*unstable, not instable
*rest state IS a stable equilibrium (albeit for a different parameter value)
*separatrix <-> saddle stable manifold

On 12 November 2015 at 18:02, Johannes Rieke [email protected]
wrote:

Included a red dot for the rest state and will explain this in the text.
Also, I thought about making a closeup of the lower left region of B (as
an extra figure), and put in some arrows that show how the short current
pulses push the trajectory from the equilibrium across the separatrix
towards the limit cycle and back.

[image: phase_space]
https://cloud.githubusercontent.com/assets/5103165/11126532/a89ea254-896f-11e5-8301-beb76a9d9e77.png

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#10 (comment)
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from drosophila-dynamics.

Better?

from drosophila-dynamics.