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2.0 2.0 1.0 7.77 MB

IQ-TREE ported to work for systems with ARM NEON ISA

License: MIT License

Python 0.09% CMake 2.13% Makefile 1.65% C++ 77.62% C 10.03% Shell 0.18% HTML 0.17% Cuda 0.71% Fortran 6.42% JavaScript 0.04% CSS 0.03% SAS 0.01% CLIPS 0.01% Pascal 0.17% Ada 0.22% Assembly 0.34% C# 0.13% Objective-C 0.05% Batchfile 0.01% M4 0.01%
arm intrinsics neon sse2neon iq-tree sse intel-sse-intrinsics simd simd-intrinsics

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iqtree_arm_neon's Issues

How to build?

I can't find instructions on how to build from source.

When I clone and do cd IQ-TREE; make I get:

❯ make              
make: /sto2/sw/tools/cmake/3.14.1/bin/cmake: No such file or directory
make: *** [cmake_check_build_system] Error 1

It looks like the make file contains a lot of hardcoded paths that are specific to your system.

Some instructions on how to build would be great.

Clarify the license terms

This project states the license terms as following:

Copyright (C) 2020 Joshua Measure-Hughes
Written for the Advanced Computing Research Centre, University of Bristol.
Licensed under the MIT License, (the “License”); you may not use this file except in compliance with the License.

I assume that this project was derived from IQ-TREE, which is licensed under GNU GPL. It makes me a bit confused that the derived work from a GPL'd work should remain the same license terms according to GNU GPL. Can you clarify this?

Port to iqtree2?

In my experience this works great, but the iqtree version used is a bit out of date. Are there any plans to port this to IQ-tree version 2?

The latest version as of the time of writing is 2.2.2.4
The latest version distributed in conda, however, is 2.2.2.3 (but I am sure it will be upgraded soon).

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