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Joon An's Projects

2016mbl_wgcna icon 2016mbl_wgcna

A tutorial for WGCNA at the Neurobiology Course, Marine Biology Laboratory 2016

a-risk icon a-risk

F-risk, plausibility of risk genes of autism

cancer_notes icon cancer_notes

A continually expanding collection of cancer genomics notes and data

dsbook icon dsbook

Repository for data science book

genebert icon genebert

A combination of RoBERTa trained from scratch on masking histone modification patterns rather than the English language and XGBoost, predicting differential gene expression from histone modifications.

hail icon hail

Scalable genomic data analysis.

hic_data icon hic_data

A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.

janggu icon janggu

Deep learning infrastructure for bioinformatics

mind icon mind

Using Multiple Measurements of Tissue to Estimate Individual- And Cell-Type-Specific Gene Expression via Deconvolution

progbio icon progbio

Teaching materials for classes teaching programming to biologists

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