jolespin / nif_finder Goto Github PK
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License: Other
NMD Inducible Feature Finder
License: Other
Hi,
When running then nif_finder.py script, I'm getting the following error:
File "pandas/_libs/index.pyx", line 138, in pandas._libs.index.IndexEngine.get_loc
File "pandas/_libs/index.pyx", line 165, in pandas._libs.index.IndexEngine.get_loc
File "pandas/_libs/hashtable_class_helper.pxi", line 5745, in pandas._libs.hashtable.PyObjectHashTable.get_item
File "pandas/_libs/hashtable_class_helper.pxi", line 5753, in pandas._libs.hashtable.PyObjectHashTable.get_item
KeyError: 'EXONS|__|count'
I'm running this on the Mus_musculus.GRCm39.107.gtf.gz build after constructing the premrna.fa file and I'm using the corresponding cds file. Please note I set up the env for dependencies as provided on the README.md
A declarative, efficient, and flexible JavaScript library for building user interfaces.
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