This repository contains supplementary files for the manuscript 'cola: an R/Bioconductor Package for Consensus Partitioning through a General Framework'.
- Supplementary file 1: The ATC Method
- Supplementary file 2: Compare Top-value Methods
- Supplementary file 3: Jaccard Index
- Supplementary file 4: Examples of cola Analysis
- Supplementary file 5: Similarity between Partitions
- Supplementary file 6: Compare Row and Column Sampling
- Supplementary file 7: Compare the Numbers of Samplings
- Supplementary file 8: Running Time of Different Partitioning Methods
- Supplementary file 9: Application of cola on Methylation Dataset
- Supplementary file 10: Golub Leukemia Dataset Analysis - Impact of Row Scaling (Two-group Classification)
- Supplementary file 11: Golub Leukemia Dataset Analysis - Impact of Row Scaling (Three-group Classification)