Tools to load COSMIC data files into Postgres and explore them
- 1_fetch_data.sh
- 2_create_db.sh
- 3_create_views.sh
- get_mutations_summary.sh
- get_mutation_matrix.sh ; create pivot table from results (read commented line in query for more details)
- get_mutations_all.sh
- cell_line_fixups.txt - corrections to normalize some COSMIC sample names
- marc_cell_lines.txt - cell lines from Marc to report on
- marc_genes.txt - genes from Marc to report on