Debug R Packages

Specify debug messages as special string constants, and control debugging of packages via environment variables. This package was largely influenced by the debug npm package.

Install the package from GitHub:

source("https://install-github.me/r-lib/debugme")

To use debugme in your package, import it, and then add the following .onLoad function to your package:

.onLoad <- function(libname, pkgname) {
  debugme::debugme()
}

You can now add debug messages via character literals. No function calls are necessary. For example:

"!DEBUG Start up phantomjs"
private$start_phantomjs(phantom_debug_level)

"!DEBUG Start up shiny"
private$start_shiny(path)

"!DEBUG create new phantomjs session"
private$web <- session$new(port = private$phantom_port)

"!DEBUG navigate to Shiny app"
private$web$go(private$get_shiny_url())

The string literals are simply ignored when debugging is turned off. To turn on debugging for a package, set the environment variable DEBUGME to the package name you want to debug. E.g. from a bash shell:

export DEBUGME=mypackage

Or from within R:

Sys.setenv(DEBUGME = "mypackage")

Separate multiple package names with commas:

export DEBUGME=mypackage,otherpackage

The debug messages will be prefixed by the package names, and assuming your terminal supports color, will be colored differently for each package.

The debugme debug strings may contain R code between backticks. This code is evaluated at runtime, if debugging is turned on. A single debug string may contain multiple backticked code chunks:

"!DEBUG x = `x`, y = `y`"
if (x != y) {
...

I have always wanted a debugging tool that

• is very simple to use,
• can be controlled via environment variables, without changing anything it the packages themselves,
• has zero impact on performance when debugging is off.

debugme is such a tool.

Function calls are relatively cheap in R, but they still do have an impact. If you never want to worry about the log messages making your code slower, you will like debugme. debugme debug strings have practically no performance penalty when debugging is off.

Here is a simple comparison between debugging with a function call, f1(), debugging with debug strings, f2() and no debugging at all.

debug <- function(msg) { cat(msg, file = "/dev/null", "\n") }
f1 <- function() {
  for (i in 1:100) {
    debug("foobar")
    Sys.sleep(.001)
  }
}

f2 <- function() {
  for (i in 1:100) {
    "!DEBUG foobar"
    Sys.sleep(.001)
  }
}

f3 <- function() {
  for (i in 1:100) {
    Sys.sleep(.001)
  }
}

microbenchmark::microbenchmark(f1(), f2(), f3(), times = 10L)

#> Unit: milliseconds
#>  expr      min       lq     mean   median       uq      max neval cld
#>  f1() 146.3444 169.5297 170.0852 172.9510 174.8810 175.9833    10   b
#>  f2() 125.9817 134.1500 134.6323 135.8692 136.1687 137.0728    10  a 
#>  f3() 127.2357 134.3947 134.4547 135.9563 136.7923 137.3158    10  a

MIT © Gábor Csárdi