jmonlong Goto Github PK

hgsvc

building variation graphs from hgsvc data

hippocamplus

A place to gather useful information I keep on forgetting.

igraph

Library for the analysis of networks

indelphi-model

Predictive model for CRISPR-mediated DNA repair outcomes through NHEJ/MMEJ, built with machine learning

jmonlong.github.io

Personal page

jmonlonghugo

The content for my personal page.

jmreviews

My reviews. Views are my own.

kyotoworkshop16-linuxintro

manu-vgsv

melpa

Recipes and build machinery for the biggest Emacs package repo

mhcut

monbug17_gviz

Short workshop on how to use Gviz package.

monbug18_rmarkdown

mydockerfiles

pangenome-evaluation

Pipeline to evaluate pangenomes, e.g. from the variation it contains or how well reads map

paragraph

Graph realignment tools for structural variants

phdthesis

My PhD thesis on "Population-Based Approaches to Characterize Copy Number Variation from Whole-Genome Sequencing in Healthy Individuals and Disease Cohorts"

pipelines

poly-wdl

Polymode for the Worflow Description Language in Emacs

popsv

Population-based detection of structural variation from High-Throughput Sequencing.

popsv-docker

Docker repository for PopSV

reppopsv

rigraph

igraph R package

ruser2015

Files/Slides for R user group March 2015

samtools-jm

Modified version of samtools

sccnautils

Functions to analyze copy number aberrations in single-cell data

sqtlseeker

R package to detect splicing QTLs (sQTLs)

sv-nicu

Annotation pipeline for structural variants found in long reads (e.g. ONT) in NICU patients.

sveval

Functions to compare a SV call sets against a truth set.

targetseqview

Visualize next generation sequencing reads over putative structural variants