jmag722 / vtk-hdf Goto Github PK

set default type to float64, h5py defaults to float32

use .vtkhdf, not .hdf

https://gitlab.kitware.com/paraview/paraview/-/blob/master/Documentation/release/ParaView-5.12.0.md#new-vtkhdf-extension-for-vtkhdf-files

allow user to zero any axis

vtk-hdf
vtkhdf
image
utils

override h5py.File for simpler API

https://stackoverflow.com/questions/9459730/how-do-i-define-a-python-class-that-i-can-use-with-the-with-statement?rq=3

https://stackoverflow.com/questions/3774328/implementing-use-of-with-object-as-f-in-custom-class-in-python

flesh out readme

get points output similar to ImageData but only for 2D slice

be able to initialize large ImageData set without meshgrid --> vectorize or for loops with parallelization or numba.

almost all tests involve first writing dummy data to a tmp_path file. move this functionality into a pytest fixture

vtk, pyvista, paraview - put in toml and readme

• organize functions by what they do within the module
• standardize function names - should dimensions imply point dimensions?
• remove utils dependency in image.py
• fix citations
• update examples and readme
• remove sequence import
• replace fielddata key arg with var
• point/cell create_dataset <-- call base private function because they share lots of lines of code
• create set_field_array() function trivial for user to do
• extent2cellshape should be extent2celldimensions
• point2cell_dimension --> point2cell_dimensions : put this in image.py

add getters for dimensions, spacing, origin, extent, bounds, etc

cell and field data examples

see https://docs.vtk.org/en/latest/design_documents/VTKFileFormats.html#hdf-file-formats

allow slices to be written on an already opened file - do not assume all the slices will be written from a 3D array

either add a computable default caching size for z-slices, or method to compute it

https://vtk.org/doc/nightly/html/VTKHDFFileFormat.html

https://docs.vtk.org/en/latest/design_documents/VTKFileFormats.html

this would be the default, allow an option here