jinfeng-wu Goto Github PK

hcp_performance

ica-aroma

Software package of ICA-AROMA; a data-driven method to identify and remove motion-related independent components from functional MRI data.

imaging-transcriptomics

A package, and script, to perform imaging transcriptomics on a neuroimaging scan.

keras

Deep Learning for humans

l0-sparse-nmf

lipsia

lipsia3.0

markello_spatialnulls

Code and documentation supporting Markello & Misic, 2021, "Comparing spatial null models for brain maps" (NeuroImage)

mdd_connectomegradient

mediationtoolbox

Single-level and multi-level mediation analyses for any kind of data, with bootstrap-based significance testing. Neuroimaging-oriented functions allow for mediation effect parametric mapping (mapping of mediation effects across the brain) and multivariate mediation.

mind

This repository contains a Python implementation of Morphometric INverse Divergence (MIND) calculation for the estimation of structural similarity networks in the brain

models

Models built with TensorFlow

more-alike-than-different-paper2021

Analyses and results for "More alike than different - Quantifying Abnormalities of Brain Structure and Function in Major Depressive Disorder across Nine Modalities"

morphometric_similarity_sz

Morphometric similarity in psychosis- data and code

mrtrix3

MRtrix3 provides a set of tools to perform various advanced diffusion MRI analyses, including constrained spherical deconvolution (CSD), probabilistic tractography, track-density imaging, and apparent fibre density

msm_hocr

Multimodal Surface Matching with Higher order Clique Reduction: Mac OS and Linux binaries

narps

Code related to Neuroimaging Analysis Replication and Prediction Study

netneurotools

Useful tools from the Network Neuroscience Lab

neural-coding

Neural coding toolbox

neuroelf-matlab

NeuroElf (MATLAB)

neuromaps

A toolbox for comparing brain maps

neurosynth

Neurosynth core tools

niimath

niimath - a clone of fslmaths

niistat

NiiStat is a set of Matlab scripts for analyzing neuroimaging data from clinical populations

nordic_raw

Matlab code for performing image reconstruction in MRI and performing the NORDIC denoising

np-factor

nspn_whitakervertes_pnas2016

Data and analysis code to reproduce the NSPN Manuscript "Adolescence is associated with genomically patterned consolidation of the hubs of the human brain connectome".

pagani-toolkit

This is a complete software package with a fire-new GUI and the updated command sets

palm

PALM: Permutation Analysis of Linear Models

petpvc

Partial Volume Correction in PET

photonai_graph

Photon Graph is an extension for the PHOTON framework that allows for the use of machine learning based on graphs. Furthermore, the Graph Utilities contain a wide variety of functions that allow for the visualization and converting of graphs.