Name: Jean Elbers
Type: User
Company: Medical University of Vienna
Bio: Lead Bioinformatician
Nanopore Sequencing Lab
Institute of Medical Genetics
Center for Pathobiochemistry and Genetics
Medical University of Vienna
Twitter: jpelbers
Location: Vienna, Austria
Jean Elbers's Projects
Open source code for AlphaFold.
Detection and visualization of annotated and potential Alternative Polyadenylation events
Rust in bioinformatics and computational biology
Benchmarking programming languages/implementations for common tasks in Bioinformatics
DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
A quality control tool for FASTQ files written in rust
genome assembly and annotation scripts
testing go
Compute error profiles from alignments
HERRO is a highly-accurate, haplotype-aware, deep-learning tool for error correction of Nanopore R10.4.1, Kit 14, Ultra-long (UL) reads.
Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes
Detecting variants in NGS short read data by sequence-to-sequence modeling
A One-Click System for Analyzing Loop-Resolution Hi-C Experiments
some JuliaLang bioinformatics scripts in the form of gists
Meson PEP 517 Python build backend
Fast and pretty dotplots for whole genomes assemblies using minimap2 and R/ggplot2
A tool for Racon polishing of miniasm assemblies
A tool for projecting genomic alignments to transcriptomic coordinates