Comments (1)
Update: Changing the name to all upper case (HUMAN_mCONST --> HUMAN_MCONST) lets it pass without the error.
This works well now, and the key was to add the mouse TRAC/TRBC genes to the 'additional-genes.fasta' file and specify -'xg' in the command.
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Related Issues (20)
- Upgrade to python 3
- Terminal 2 TRAC nucleotides missing from output
- Give warning if only gene level specified when multiple alleles known
- Make length of J substring match shorter/changeable in command line HOT 1
- UserWarning error in Thimble HOT 1
- Post-TRAC stop codon nucleotides resulting in frameshifts in TRA-TRB paired sequences HOT 1
- Add capacity for gamma/delta TCR stitching
- Thimble GUI example files throw error HOT 1
- Simplifying output / silent mode HOT 1
- J/C region broken in certain genes in skip/extra gene mode HOT 1
- Lower case CDR3 amino acid characters cause an error HOT 1
- TRDV2 error HOT 2
- Alternative non-templated codon usage?
- Improve % of perfectly replicated CDR3s when using a NT CDR3
- Add -cite option to stitchr
- thimble function gives an error for LEADER sequence when stitching TCR HOT 3
- Compatibility of stitchr with Windows HOT 5
- CDR1/2 HOT 2
- Wild card usage in Thimble ignores extra genes (-xg/additional-genes.fasta)
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