Comments (1)
Excellent point, this was a silly mistake - those CDR3s don't use those Js! Nice easy fix
from stitchr.
Related Issues (20)
- Upgrade to python 3
- Terminal 2 TRAC nucleotides missing from output
- Give warning if only gene level specified when multiple alleles known
- Make length of J substring match shorter/changeable in command line HOT 1
- UserWarning error in Thimble HOT 1
- Post-TRAC stop codon nucleotides resulting in frameshifts in TRA-TRB paired sequences HOT 1
- Add capacity for gamma/delta TCR stitching
- Thimble GUI example files throw error HOT 1
- Simplifying output / silent mode HOT 1
- J/C region broken in certain genes in skip/extra gene mode HOT 1
- Lower case CDR3 amino acid characters cause an error HOT 1
- TRDV2 error HOT 2
- Possible to use custom species (non-human/non-mouse)? HOT 1
- Alternative non-templated codon usage?
- Improve % of perfectly replicated CDR3s when using a NT CDR3
- Add -cite option to stitchr
- Can't get demo TCRs or help functions to print HOT 2
- Make stitchr work on mouse TCRs HOT 1
- fails weirdly if it can't find tcr data HOT 2
- exits with an error but zero status code HOT 1
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from stitchr.