izkula / cosmos-tools Goto Github PK

I've installed the environment successfully, but I get this error message when I run 'pytest'. How can I fix this problem?

=================================== ERRORS ====================================
_______________ ERROR collecting tests/test_clustering_utils.py _______________
tests\test_clustering_utils.py:1: in
import cosmos.traces.clustering_utils as cu
cosmos\traces\clustering_utils.py:1: in
import cosmos.traces.trace_analysis_utils as utils
cosmos\traces\trace_analysis_utils.py:29: in
import seaborn as sns
..\anaconda3\envs\cosmos3\lib\site-packages\seaborn_init_.py:9: in
from .regression import *
..\anaconda3\envs\cosmos3\lib\site-packages\seaborn\regression.py:27: in
from .axisgrid import FacetGrid, _facet_docs
..\anaconda3\envs\cosmos3\lib\site-packages\seaborn\axisgrid.py:16: in
from .distributions import distplot, kdeplot, freedman_diaconis_bins
..\anaconda3\envs\cosmos3\lib\site-packages\seaborn\distributions.py:13: in
import statsmodels.nonparametric.api as smnp
..\anaconda3\envs\cosmos3\lib\site-packages\statsmodels\nonparametric\api.py:7: in
from .kde import KDEUnivariate
..\anaconda3\envs\cosmos3\lib\site-packages\statsmodels\nonparametric\kde.py:23: in
from .linbin import fast_linbin
statsmodels\nonparametric\linbin.pyx:1: in init statsmodels.nonparametric.linbin
???
E ValueError: numpy.ufunc size changed, may indicate binary incompatibility. Expected 216 from C header, got 192 from PyObject
________________ ERROR collecting tests/test_cosmos_dataset.py ________________
tests\test_cosmos_dataset.py:3: in
from cosmos.imaging.cosmos_dataset import CosmosDataset
cosmos\imaging\cosmos_dataset.py:21: in
import cosmos.traces.trace_analysis_utils as trace_utils
cosmos\traces\trace_analysis_utils.py:29: in
import seaborn as sns
..\anaconda3\envs\cosmos3\lib\site-packages\seaborn_init.py:9: in
from .regression import *
..\anaconda3\envs\cosmos3\lib\site-packages\seaborn\regression.py:27: in
from .axisgrid import FacetGrid, _facet_docs
..\anaconda3\envs\cosmos3\lib\site-packages\seaborn\axisgrid.py:16: in
from .distributions import distplot, kdeplot, freedman_diaconis_bins
..\anaconda3\envs\cosmos3\lib\site-packages\seaborn\distributions.py:13: in
import statsmodels.nonparametric.api as smnp
..\anaconda3\envs\cosmos3\lib\site-packages\statsmodels\nonparametric\api.py:7: in
from .kde import KDEUnivariate
..\anaconda3\envs\cosmos3\lib\site-packages\statsmodels\nonparametric\kde.py:23: in
from .linbin import fast_linbin
statsmodels\nonparametric\linbin.pyx:1: in init statsmodels.nonparametric.linbin
???
E ValueError: numpy.ufunc size changed, may indicate binary incompatibility. Expected 216 from C header, got 192 from PyObject
------------------------------- Captured stderr -------------------------------
c:\users\rhkd9\anaconda3\envs\cosmos3\lib\site-packages\h5py_init.py:34: FutureWarning: Conversion of the second argument of issubdtype from float to np.floating is deprecated. In future, it will be treated as np.float64 == np.dtype(float).type.
from ._conv import register_converters as _register_converters
________________ ERROR collecting tests/test_decoding_utils.py ________________
tests\test_decoding_utils.py:1: in
import cosmos.traces.decoding_utils as utils
cosmos\traces\decoding_utils.py:25: in
from cosmos.traces.decoding.decoders import DenseNNDecoder, LSTMDecoder
cosmos\traces\decoding\decoders.py:8: in
import statsmodels.api as sm
..\anaconda3\envs\cosmos3\lib\site-packages\statsmodels\api.py:11: in
from .regression.recursive_ls import RecursiveLS
..\anaconda3\envs\cosmos3\lib\site-packages\statsmodels\regression\recursive_ls.py:14: in
from statsmodels.tsa.statespace.mlemodel import (
..\anaconda3\envs\cosmos3\lib\site-packages\statsmodels\tsa\statespace\mlemodel.py:32: in
from .simulation_smoother import SimulationSmoother
..\anaconda3\envs\cosmos3\lib\site-packages\statsmodels\tsa\statespace\simulation_smoother.py:9: in
from .kalman_smoother import KalmanSmoother
..\anaconda3\envs\cosmos3\lib\site-packages\statsmodels\tsa\statespace\kalman_smoother.py:11: in
from statsmodels.tsa.statespace.representation import OptionWrapper
..\anaconda3\envs\cosmos3\lib\site-packages\statsmodels\tsa\statespace\representation.py:9: in
from .tools import (
..\anaconda3\envs\cosmos3\lib\site-packages\statsmodels\tsa\statespace\tools.py:14: in
from . import (_initialization, _representation, _kalman_filter,
statsmodels\tsa\statespace_initialization.pyx:1: in init statsmodels.tsa.statespace.initialization
???
E ValueError: numpy.ufunc size changed, may indicate binary incompatibility. Expected 216 from C header, got 192 from PyObject
------------------------------- Captured stderr -------------------------------
Using TensorFlow backend.
_____________ ERROR collecting tests/test_trace_analysis_utils.py _____________
tests\test_trace_analysis_utils.py:2: in
import cosmos.traces.trace_analysis_utils as utils
cosmos\traces\trace_analysis_utils.py:29: in
import seaborn as sns
..\anaconda3\envs\cosmos3\lib\site-packages\seaborn_init.py:9: in
from .regression import *
..\anaconda3\envs\cosmos3\lib\site-packages\seaborn\regression.py:27: in
from .axisgrid import FacetGrid, _facet_docs
..\anaconda3\envs\cosmos3\lib\site-packages\seaborn\axisgrid.py:16: in
from .distributions import distplot, kdeplot, _freedman_diaconis_bins
..\anaconda3\envs\cosmos3\lib\site-packages\seaborn\distributions.py:13: in
import statsmodels.nonparametric.api as smnp
..\anaconda3\envs\cosmos3\lib\site-packages\statsmodels\nonparametric\api.py:7: in
from .kde import KDEUnivariate
..\anaconda3\envs\cosmos3\lib\site-packages\statsmodels\nonparametric\kde.py:23: in
from .linbin import fast_linbin
statsmodels\nonparametric\linbin.pyx:1: in init statsmodels.nonparametric.linbin
???
E ValueError: numpy.ufunc size changed, may indicate binary incompatibility. Expected 216 from C header, got 192 from PyObject
!!!!!!!!!!!!!!!!!!! Interrupted: 4 errors during collection !!!!!!!!!!!!!!!!!!!
========================== 4 error in 20.29 seconds ===========================