May be delete all the data.

Error downloading object: res/data/simple.h5 (ea1b961): Smudge error: Error downloading res/data/simple.h5 (ea1b961eac11430ceefa2b36069be5f0a18f666ae6b5dad5838e959a076023a4): batch response: This repository is over its data quota. Account responsible for LFS bandwidth should purchase more data packs to restore access.

Hi there,

thank you for creating such a nice package. I am a novice to python and struggle with getting it installed on Windows with an Anaconda Installation of Python.

I opened an Anaconda command prompt, but the step-by-step Windows installation instructions fail with

venv\bin\activate.bat
The system cannot find the path specified.

Do you have any recommendations? Would be great to make such a viewer accessible without needing a python installation.

All the best,
Lars

I can open image h5 datasets, but viewer throws this error for the test raw datasets:

objc[37132]: Class FIFinderSyncExtensionHost is implemented in both /System/Library/PrivateFrameworks/FinderKit.framework/Versions/A/FinderKit (0x7fff9b082cd0) and /System/Library/PrivateFrameworks/FileProvider.framework/OverrideBundles/FinderSyncCollaborationFileProviderOverride.bundle/Contents/MacOS/FinderSyncCollaborationFileProviderOverride (0x11544ccd8). One of the two will be used. Which one is undefined.
[INFO] Opening file: installpath/ismrmrdviewer/res/data/simple.h5
Traceback (most recent call last):
File "installpath/ismrmrdviewer/venv/lib/python3.6/site-packages/ismrmrdviewer-0.1.0-py3.6.egg/ismrmrdviewer/ui/MainWindow.py", line 43, in open_file
File "installpath/ismrmrdviewer/venv/lib/python3.6/site-packages/ismrmrdviewer-0.1.0-py3.6.egg/ismrmrdviewer/ui/FileWidget.py", line 19, in init
File "installpath/ismrmrdviewer/venv/lib/python3.6/site-packages/ismrmrd/file.py", line 353, in init
self.__file = h5py.File(filename, mode)
File "installpath/ismrmrdviewer/venv/lib/python3.6/site-packages/h5py/_hl/files.py", line 394, in init
swmr=swmr)
File "installpath/ismrmrdviewer/venv/lib/python3.6/site-packages/h5py/_hl/files.py", line 170, in make_fid
fid = h5f.open(name, flags, fapl=fapl)
File "h5py/_objects.pyx", line 54, in h5py._objects.with_phil.wrapper
File "h5py/_objects.pyx", line 55, in h5py._objects.with_phil.wrapper
File "h5py/h5f.pyx", line 85, in h5py.h5f.open
OSError: Unable to open file (file signature not found)

// --------------------------------------------------
This is running macOS, with the following setup.

git clone https://github.com/ismrmrd/ismrmrdviewer.git
cd ismrmrdviewer/
python3 -m venv venv
. venv/bin/activate
python3 setup.py --verbose install
ismrmrdviewer

Hi,
This is a very good tool and it helps a lot. But in actual use, I often care about the number of lines. So I hope the tool can add information of line number in the next updata.
Thanks a lot!!!

Currently, the ismrmrdviewer repository is neutered by the fact that the ismrmrd organization is out of LFS storage.
This means noone can pull or push to ismrmrdviewer or indeed any forks, due to the novel way GitHub registers LFS storage.

Our options are:

• Remove LFS objects from ismrmrdviewer (this means all tests data).
  or
• Pay for LFS.

@hansenms Could you guys be persuaded to sponsor the LFS data?

I've been trying to install the ismrmrd-viewer based on the repository available here.

I've tried running:

python setup.py install

from both an Anaconda environment on macOS Mojave, and an openSUSE container. In both cases, the installation is made to a virtual environment called 'viewertest'. And in both cases, I see additional files:

(viewertest root)/bin/ismrmrd-viewer
(viewertest root)/lib/python3.6/site-packages/ismrmrd_viewer-0.0.2-py3.6.egg

the latter of which seems to be a flat file, and doesn't seem to include any contents of the 'src' directory, that's needed to support reading and viewing the raw files. When I try to run the viewer:

python (viewertest root)/bin/ismrmrd-viewer ScanArchive_20190529_090502374_converted.h5

I get the following error:

Traceback (most recent call last):
File " (viewertest root)/bin/ismrmrd-viewer", line 11, in
load_entry_point('ismrmrd-viewer==0.0.2', 'gui_scripts', 'ismrmrd-viewer')()
File " (viewertest root)/lib64/python3.6/site-packages/pkg_resources/init.py", line 487, in load_entry_point
return get_distribution(dist).load_entry_point(group, name)
File " (viewertest root)/lib64/python3.6/site-packages/pkg_resources/init.py", line 2728, in load_entry_point
return ep.load()
File " (viewertest root)/lib64/python3.6/site-packages/pkg_resources/init.py", line 2346, in load
return self.resolve()
File " (viewertest root)/lib64/python3.6/site-packages/pkg_resources/init.py", line 2352, in resolve
module = import(self.module_name, fromlist=['name'], level=0)
ModuleNotFoundError: No module named 'viewer'

I feel like I am missing something really obvious. I am also uploading the installation log for this package.

Maybe the issue is a missing init.py in 'src'?

Many thanks!

install_log.txt

I am running into the following error whenever I try to execute the program ismrmrdviewer from the command line.

File "/home/user/miniconda3/envs/ismrmrdViewer/lib/python3.8/site-packages/shiboken2/files.dir/shibokensupport/__feature__.py", line 146, in _import ImportError: numpy.core.multiarray failed to import

I have installed ismrmrdviewer inside a conda virtual env with python 3.8.5
I have installed the requirement.txt dependencies and ran python3 setup.py install

Are there any particular python versions or particular versions of the dependencies that need to be installed in order for it to run correctly?

Installing with pip seems to be broken due to exceeded LFS bandwidth quota.

• Command: pip install git+https://github.com/ismrmrd/ismrmrdviewer
• Error:batch response: This repository is over its data quota. Account responsible for LFS bandwidth should purchase more data packs to restore access.
• Possible workaround: GIT_LFS_SKIP_SMUDGE=1 pip install git+https://github.com/ismrmrd/ismrmrdviewer

Python 3.9 cannot run PySide2 due to some version conflict with Qt5, where 3.8 works fine.

Potential fix using PySide6?

After the update I am unable to use the viewer just get a message No protocol specified.

Hi,

I was trying to use the ismrmrdviewer, and after installation I got the following error message when launching the viewer (python3 ismrmrdviewer):

qt.qpa.plugin: Could not load the Qt platform plugin "xcb" in "" even though it was found.
This application failed to start because no Qt platform plugin could be initialized. Reinstalling the application may fix this problem.

Available platform plugins are: eglfs, linuxfb, minimal, minimalegl, offscreen, vnc, wayland-egl, wayland, wayland-xcomposite-egl, wayland-xcomposite-glx, webgl, xcb.

[1]    23876 abort      python3 ismrmrdviewer

https://github.com/DietrichBE/ismrmrd-viewer ...getting a bit old, but I think it's still a bit faster for large (> 2 GB) files ;)

Searching for ismrmrd on pypi I could only see the version from last year:

https://pypi.org/project/ismrmrd-viewer/#description
Running

pip3 install --user ismrmrd-viewer

(there was no "ismrmrdviewer") installed, but I couldn't get the module to work.

Either python ismrmrd-viewer/ python -m ismrmrd-viewer