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License: MIT License
Bioconductor package to encapsulate multiple datasets (including BioC omic data types)
License: MIT License
Hi,
I´m getting this error on example dataset
fit.single=iClusterPlus(dt1=gbm.mut,dt2=gbm.cn,dt3=gbm.exp,
type=c("binomial","gaussian","gaussian"),
lambda=c(0.04,0.61,0.90),K=2,maxiter=10)
Error in dataType(dt1, type[1], K) :
Error: some columns of binomial data are made of categories not equal to 2, which must be removed.
*for(k in 1:5){
cv.fit = tune.iClusterPlus(cpus=12,dt1=gbm.mut,dt2=gbm.cn,dt3=gbm.exp,
type=c("binomial","gaussian","gaussian"), n.lambda=35, K=k,maxiter=20)
save(cv.fit, file=paste("cv.fit.k",k,".Rdata",sep=""))
}*
35 points of lambdas are used to tune parameters.
Begin parallel computation
End parallel computation
35 points of lambdas are used to tune parameters.
Begin parallel computation
End parallel computation
35 points of lambdas are used to tune parameters.
Begin parallel computation
End parallel computation
35 points of lambdas are used to tune parameters.
Begin parallel computation
End parallel computation
35 points of lambdas are used to tune parameters.
Begin parallel computation
End parallel computation
Warning messages:
1: In mclapply(1:nrow(ud), FUN = function(x) iClusterPlus(dt1, dt2, :
35 function calls resulted in an error
2: In mclapply(1:nrow(ud), FUN = function(x) iClusterPlus(dt1, dt2, :
35 function calls resulted in an error
3: In mclapply(1:nrow(ud), FUN = function(x) iClusterPlus(dt1, dt2, :
35 function calls resulted in an error
4: In mclapply(1:nrow(ud), FUN = function(x) iClusterPlus(dt1, dt2, :
35 function calls resulted in an error
5: In mclapply(1:nrow(ud), FUN = function(x) iClusterPlus(dt1, dt2, :
35 function calls resulted in an error
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