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License: Other
Compendium of packages used in BRGE group
License: Other
Hi Carles, @carleshf @isglobal-brge
Please check the build report below and address any issues with the experiment data package.
https://bioconductor.org/checkResults/3.7/data-experiment-LATEST/brgedata/malbec2-buildsrc.html
Warning: file ‘brge_expo.rda’ has magic number 'versi'
Use of save versions prior to 2 is deprecated
Error in load(zfile, envir = envir) :
bad restore file magic number (file may be corrupted) -- no data loaded
ERROR: lazydata failed for package ‘brgedata’
Your omicRexposome
package is candidate for deprecation. Please resolve these issues
as soon as possible for your continued inclusion in Bioconductor.
Best regards,
Marcel
Hi, I download the metabol_serum/metabol_urine.Rdata files, and found there is no metabolite names in metabol_serum.Rdata file, only the classe information. And there is metabolite information (name, ID etc) in metabol_urine@featureData@data.
I am using brgedata
version 1.10.0 with R
version 4.0.2 on Ubuntu 18.04.
I am trying to use read.plink
with the obesity
files (which are not available in the directory of the package, so I downloaded them manually from the GitHub repository). The problem is that when I try to read obesity.bed
I receive the following error message:
Error in scan(..., :
line 1 did not have 3 elements
Any suggestion? Thank you. @isglobal-brge
devtools::install_local("/home/sheyu/Downloads/omic1/brgedata-master.zip")
Skipping 1 packages ahead of CRAN: formatR
Installing package into ‘/home/sheyu/R/x86_64-pc-linux-gnu-library/3.6’
(as ‘lib’ is unspecified)
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