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BRGEdata

BRGEdata in a data-R package that includes a collection of BRGE omic and exposome data.

Data available in this R package:

Data Type Number of Samples Number of Features Technology File Name Object Name Class
Exposome 110 15 brge_expo.rda brge_expo ExposomeSet
Transcriptome 100 67528 Affymetrix HTA 2.0 brge_gexp.rda brge_gexp ExpressionSet
Methylome 20 476946 Illumina Human Methylation 450K brge_methy.rda brge_methy GenomicRatioSet
Proteome 90 47 brge_prot.rda brge_prot ExpressionSet

The phenotype data corresponding to the samples was included in each set:

  • sex
  • age

Moreover, the ExposomeSet includes:

  • asthma status
  • rhinitis status

The following table indicates the source of each class includeid in BRGdata data-R package:

Class Source
ExposomeSet rexposome
ExpressionSet Biobase
GenomicRatioSet minfi

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