isglobal-brge / affy2sv Goto Github PK
View Code? Open in Web Editor NEWStructural variants calling for Affymetrix Arrays
Structural variants calling for Affymetrix Arrays
Hi,
I'm trying to install affy2sv on R and am getting this error:
Warning message: package ‘affy2sv’ is not available (for R version 3.5.1)
I am using
install.packages("affy2sv")
to try to install affy2sv.
Has the R dependency changed for the package? I also tried R 4.0 and I got the same error.
Thank you!
Hi !
When I tried below code, I got Error.
`aptParam <- APTparam(
type="cytoscan",
level="standard",
cel.list="/Dir/to/CEL",
output.path="/Dir/to/CEL",
analysis.path="/Dir/to/CytoScanHD_Array_Analysis_Files_NA36.r6/",
cdf="CytoScanHD_Array.cdf",
chrX="CytoScanHD_Array.chrXprobes",
chrY="CytoScanHD_Array.chrYprobes",
qca="CytoScanHD_Array.r1.qca",
qcc="CytoScanHD_Array.r1.qcc",
snp="CytoScanHD_Array.snplist.txt",
annot.db="CytoScanHD_Array.na36.annot.db",
refmodel="CytoScanHD_Array.na36.r1.REF_MODEL"
)
Cyto2APT(aptParam)`
In Base Engine Constructor
In Base Engine Destructor
In Base Engine Constructor
CNAnalysisEngine::createAnalysis()
CovariateParams::determineCovariateMap - num of covariates to load: 0
In Base Engine Destructor
Parameters are ok.FATAL ERROR:File5: File5_Group.cpp:388 File5_Group::open('Reference'): Unable to open group!
What is the problem?
Thanks for reply!
Hi :)
I want to use affy2sv.
But, I can not find user guide.
I found wiki page link, but, repository not found anymore.
I downloded .zip file. But I would like to know more details on how to use it.
Thanks your reply!
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.